20 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tab3	Uncharacterized protein. (692 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	uba52	MGC80109 protein. (128 aa)
	rps27a	MGC81889 protein. (156 aa)
	map3k7	MAP3K7 protein. (616 aa)
	LOC398025	TAB1. (498 aa)
	A0A1L8HX68	Ubiquitin-like domain-containing protein. (173 aa)
	alpk1	Alpha-type protein kinase domain-containing protein. (1172 aa)
	tifa-2	FHA domain-containing protein. (178 aa)
	ubc	Uncharacterized protein. (533 aa)
	tifa	FHA domain-containing protein. (178 aa)
	tab1	PPM-type phosphatase domain-containing protein. (500 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	A0A1L8H8K5	Uncharacterized protein. (84 aa)
	A0A1L8H8J1	Uncharacterized protein. (463 aa)
	Traf6.L	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)
	A0A1L8FTA7	Ubiquitin-like domain-containing protein. (105 aa)
	A0A1L8G366	Protein kinase domain-containing protein. (588 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	Traf6.S	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (556 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FTA7	A0A1L8G366	A0A1L8FTA7	A0A1L8G366	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.550
A0A1L8FTA7	A0A1L8G5V1	A0A1L8FTA7	A0A1L8G5V1	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.989
A0A1L8FTA7	A0A1L8H8J1	A0A1L8FTA7	A0A1L8H8J1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.687
A0A1L8FTA7	A0A1L8H8K5	A0A1L8FTA7	A0A1L8H8K5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.687
A0A1L8FTA7	A0A1L8HCZ9	A0A1L8FTA7	A0A1L8HCZ9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.908
A0A1L8FTA7	Traf6.L	A0A1L8FTA7	A0A1L8GIM0	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.864
A0A1L8FTA7	Traf6.S	A0A1L8FTA7	A0A1L8GE35	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.864
A0A1L8FTA7	map3k7	A0A1L8FTA7	O73613	Ubiquitin-like domain-containing protein.	MAP3K7 protein.	0.550
A0A1L8FTA7	rps27a	A0A1L8FTA7	Q6GMC1	Ubiquitin-like domain-containing protein.	MGC81889 protein.	0.989
A0A1L8FTA7	tab3	A0A1L8FTA7	A0A1L8HGJ3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.687
A0A1L8FTA7	ubc	A0A1L8FTA7	A0A1L8HQK4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.907
A0A1L8FTA7	ubc-2	A0A1L8FTA7	Q7SY79	Ubiquitin-like domain-containing protein.	Ubc-prov protein.	0.907
A0A1L8G366	A0A1L8FTA7	A0A1L8G366	A0A1L8FTA7	Protein kinase domain-containing protein.	Ubiquitin-like domain-containing protein.	0.550
A0A1L8G366	A0A1L8G5V1	A0A1L8G366	A0A1L8G5V1	Protein kinase domain-containing protein.	Ubiquitin-like domain-containing protein.	0.602
A0A1L8G366	A0A1L8H8J1	A0A1L8G366	A0A1L8H8J1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.936
A0A1L8G366	A0A1L8H8K5	A0A1L8G366	A0A1L8H8K5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.936
A0A1L8G366	A0A1L8HCZ9	A0A1L8G366	A0A1L8HCZ9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.555
A0A1L8G366	A0A1L8HX68	A0A1L8G366	A0A1L8HX68	Protein kinase domain-containing protein.	Ubiquitin-like domain-containing protein.	0.550
A0A1L8G366	LOC398025	A0A1L8G366	B7ZQK1	Protein kinase domain-containing protein.	TAB1.	0.980
A0A1L8G366	Traf6.L	A0A1L8G366	A0A1L8GIM0	Protein kinase domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.981