19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubc-2	Ubc-prov protein. (609 aa)
	Nbr1.S	Uncharacterized protein. (965 aa)
	Nbr1.L	Uncharacterized protein. (969 aa)
	pex5	TPR_REGION domain-containing protein. (619 aa)
	A0A1L8FTA7	Ubiquitin-like domain-containing protein. (105 aa)
	A0A1L8G410	TPR_REGION domain-containing protein. (603 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	A0A1L8G9V7	TPR_REGION domain-containing protein. (603 aa)
	sqstm1	MGC64432 protein. (454 aa)
	pwwp2a	PWWP domain-containing protein 2A; H2A.Z-specific chromatin binding protein which plays an important role in the neural crest cell differentiation and/or migration during early development and is essential for the development of the head and eye. (784 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	kxd1	KxDL domain-containing protein. (195 aa)
	ubc	Uncharacterized protein. (533 aa)
	Kxd1.L	KxDL domain-containing protein. (195 aa)
	A0A1L8HX68	Ubiquitin-like domain-containing protein. (173 aa)
	Usp30.L	USP domain-containing protein; Belongs to the peptidase C19 family. (454 aa)
	ilrun	MGC130859 protein. (278 aa)
	rps27a	MGC81889 protein. (156 aa)
	uba52	MGC80109 protein. (128 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FTA7	A0A1L8G410	A0A1L8FTA7	A0A1L8G410	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.511
A0A1L8FTA7	A0A1L8G5V1	A0A1L8FTA7	A0A1L8G5V1	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.989
A0A1L8FTA7	A0A1L8G9V7	A0A1L8FTA7	A0A1L8G9V7	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.511
A0A1L8FTA7	A0A1L8HCZ9	A0A1L8FTA7	A0A1L8HCZ9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.908
A0A1L8FTA7	Nbr1.L	A0A1L8FTA7	A0A1L8ETV5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.986
A0A1L8FTA7	Nbr1.S	A0A1L8FTA7	A0A1L8EMC4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.986
A0A1L8FTA7	Usp30.L	A0A1L8FTA7	A0A1L8HZU8	Ubiquitin-like domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.961
A0A1L8FTA7	ilrun	A0A1L8FTA7	Q3KQ90	Ubiquitin-like domain-containing protein.	MGC130859 protein.	0.491
A0A1L8FTA7	pex5	A0A1L8FTA7	A0A1L8FDW4	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.511
A0A1L8FTA7	rps27a	A0A1L8FTA7	Q6GMC1	Ubiquitin-like domain-containing protein.	MGC81889 protein.	0.989
A0A1L8FTA7	sqstm1	A0A1L8FTA7	Q6PGS1	Ubiquitin-like domain-containing protein.	MGC64432 protein.	0.745
A0A1L8FTA7	ubc	A0A1L8FTA7	A0A1L8HQK4	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.907
A0A1L8FTA7	ubc-2	A0A1L8FTA7	Q7SY79	Ubiquitin-like domain-containing protein.	Ubc-prov protein.	0.907
A0A1L8G410	A0A1L8FTA7	A0A1L8G410	A0A1L8FTA7	TPR_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.511
A0A1L8G410	A0A1L8G5V1	A0A1L8G410	A0A1L8G5V1	TPR_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.600
A0A1L8G410	A0A1L8HCZ9	A0A1L8G410	A0A1L8HCZ9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.620
A0A1L8G410	A0A1L8HX68	A0A1L8G410	A0A1L8HX68	TPR_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.511
A0A1L8G410	Nbr1.L	A0A1L8G410	A0A1L8ETV5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.935
A0A1L8G410	Nbr1.S	A0A1L8G410	A0A1L8EMC4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.935
A0A1L8G410	Usp30.L	A0A1L8G410	A0A1L8HZU8	TPR_REGION domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.750