38 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	socs3l	Uncharacterized protein. (215 aa)
	A0A1L8EK19	Uncharacterized protein. (142 aa)
	csf3	Uncharacterized protein. (206 aa)
	Socs3.S	Uncharacterized protein. (250 aa)
	grb2	Uncharacterized protein. (229 aa)
	A0A1L8ERB7	Ubiquitin-like domain-containing protein. (144 aa)
	csf3-2	Uncharacterized protein. (211 aa)
	grb2-2	Uncharacterized protein. (229 aa)
	Elob.L	Ubiquitin-like domain-containing protein. (200 aa)
	A0A1L8FG16	Uncharacterized protein. (559 aa)
	lyn	Tyrosine-protein kinase. (508 aa)
	lyn-2	Tyrosine-protein kinase. (508 aa)
	A0A1L8G2H8	Uncharacterized protein; Belongs to the SKP1 family. (69 aa)
	A0A1L8G5V1	Ubiquitin-like domain-containing protein. (156 aa)
	A0A1L8GBK1	Uncharacterized protein. (414 aa)
	A0A1L8GFQ7	Tyrosine-protein kinase. (974 aa)
	A0A1L8GLW3	Tyrosine-protein kinase. (1142 aa)
	tyk2	Tyrosine-protein kinase. (1179 aa)
	cul5	CULLIN_2 domain-containing protein; Belongs to the cullin family. (780 aa)
	gab2	PH domain-containing protein. (673 aa)
	A0A1L8HCZ9	Uncharacterized protein. (307 aa)
	Csf3r.L	Uncharacterized protein. (819 aa)
	gab2-2	PH domain-containing protein. (677 aa)
	Syk.S	Tyrosine-protein kinase. (632 aa)
	ubc	Uncharacterized protein. (533 aa)
	syk	Tyrosine-protein kinase. (605 aa)
	A0A1L8I158	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (608 aa)
	A0A310TLE9	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (96 aa)
	socs1	Suppressor of cytokine signaling. (211 aa)
	rps27a	MGC81889 protein. (156 aa)
	socs1-2	MGC80232 protein. (211 aa)
	socs3	MGC81248 protein. (199 aa)
	rnf7	MGC81158 protein. (96 aa)
	eloc	Tceb1-prov protein. (112 aa)
	ubc-2	Ubc-prov protein. (609 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	A0A1L8FND6	Uncharacterized protein. (232 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EK19	A0A1L8ERB7	A0A1L8EK19	A0A1L8ERB7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.407
A0A1L8EK19	A0A1L8FG16	A0A1L8EK19	A0A1L8FG16	Uncharacterized protein.	Uncharacterized protein.	0.550
A0A1L8EK19	A0A1L8FND6	A0A1L8EK19	A0A1L8FND6	Uncharacterized protein.	Uncharacterized protein.	0.779
A0A1L8EK19	A0A1L8G2H8	A0A1L8EK19	A0A1L8G2H8	Uncharacterized protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.417
A0A1L8EK19	A0A1L8G5V1	A0A1L8EK19	A0A1L8G5V1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.439
A0A1L8EK19	A0A1L8GBK1	A0A1L8EK19	A0A1L8GBK1	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A1L8EK19	A0A1L8GFQ7	A0A1L8EK19	A0A1L8GFQ7	Uncharacterized protein.	Tyrosine-protein kinase.	0.747
A0A1L8EK19	A0A1L8GLW3	A0A1L8EK19	A0A1L8GLW3	Uncharacterized protein.	Tyrosine-protein kinase.	0.747
A0A1L8EK19	A0A1L8HCZ9	A0A1L8EK19	A0A1L8HCZ9	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A1L8EK19	A0A1L8I158	A0A1L8EK19	A0A1L8I158	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.550
A0A1L8EK19	A0A310TLE9	A0A1L8EK19	A0A310TLE9	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.417
A0A1L8EK19	Elob.L	A0A1L8EK19	A0A1L8EZ05	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.407
A0A1L8EK19	Ptpn11.S	A0A1L8EK19	Q92124	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.550
A0A1L8EK19	Socs3.S	A0A1L8EK19	A0A1L8EM41	Uncharacterized protein.	Uncharacterized protein.	0.779
A0A1L8EK19	Syk.S	A0A1L8EK19	A0A1L8HPI7	Uncharacterized protein.	Tyrosine-protein kinase.	0.488
A0A1L8EK19	csf3	A0A1L8EK19	A0A1L8EKK4	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A1L8EK19	csf3-2	A0A1L8EK19	A0A1L8ERX3	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A1L8EK19	cul5	A0A1L8EK19	A0A1L8HAU2	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.556
A0A1L8EK19	eloc	A0A1L8EK19	Q6PHW7	Uncharacterized protein.	Tceb1-prov protein.	0.417
A0A1L8EK19	grb2	A0A1L8EK19	A0A1L8EMZ6	Uncharacterized protein.	Uncharacterized protein.	0.652