7 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mapre2.S	Uncharacterized protein. (327 aa)
	Mapre3.S	Uncharacterized protein. (316 aa)
	A0A1L8GCC4	Uncharacterized protein. (279 aa)
	Parvg.S	Uncharacterized protein. (314 aa)
	A0A1L8GW33	Uncharacterized protein. (305 aa)
	mapre1	XEB1B protein. (295 aa)
	mapre1-2	XEB1A. (295 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GCC4	mapre1	A0A1L8GCC4	Q8UW77	Uncharacterized protein.	XEB1B protein.	0.646
A0A1L8GCC4	mapre1-2	A0A1L8GCC4	Q8UW78	Uncharacterized protein.	XEB1A.	0.646
Mapre2.S	mapre1	A0A1L8FSZ3	Q8UW77	Uncharacterized protein.	XEB1B protein.	0.654
Mapre2.S	mapre1-2	A0A1L8FSZ3	Q8UW78	Uncharacterized protein.	XEB1A.	0.649
Mapre3.S	mapre1	A0A1L8G5X6	Q8UW77	Uncharacterized protein.	XEB1B protein.	0.653
Mapre3.S	mapre1-2	A0A1L8G5X6	Q8UW78	Uncharacterized protein.	XEB1A.	0.654
mapre1	A0A1L8GCC4	Q8UW77	A0A1L8GCC4	XEB1B protein.	Uncharacterized protein.	0.646
mapre1	Mapre2.S	Q8UW77	A0A1L8FSZ3	XEB1B protein.	Uncharacterized protein.	0.654
mapre1	Mapre3.S	Q8UW77	A0A1L8G5X6	XEB1B protein.	Uncharacterized protein.	0.653
mapre1-2	A0A1L8GCC4	Q8UW78	A0A1L8GCC4	XEB1A.	Uncharacterized protein.	0.646
mapre1-2	Mapre2.S	Q8UW78	A0A1L8FSZ3	XEB1A.	Uncharacterized protein.	0.649
mapre1-2	Mapre3.S	Q8UW78	A0A1L8G5X6	XEB1A.	Uncharacterized protein.	0.654