(18 nodes) CS domain network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ptges3l.L	CS domain-containing protein. (159 aa)
	itgb1bp2	Uncharacterized protein. (373 aa)
	Nudcd1.S	CS domain-containing protein. (586 aa)
	cyb5r4	Uncharacterized protein. (522 aa)
	usp19	Uncharacterized protein. (1432 aa)
	Cacybp.L	Uncharacterized protein. (226 aa)
	A0A1L8GPX4	Uncharacterized protein. (1410 aa)
	dnaaf4	Uncharacterized protein. (411 aa)
	Nudc.S	CS domain-containing protein. (371 aa)
	A0A1L8H9B9	Uncharacterized protein. (264 aa)
	chordc1	Uncharacterized protein. (334 aa)
	sugt1	Uncharacterized protein. (331 aa)
	Ptges3.L	CS domain-containing protein. (218 aa)
	nudcd3	LOC100036878 protein. (347 aa)
	nudcd2	LOC496162 protein. (157 aa)
	nudcd3-2	MGC80778 protein. (346 aa)
	nudc	MGC83068 protein. (329 aa)
	cacybp	Sip-prov protein. (226 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8H9B9	Cacybp.L	A0A1L8H9B9	A0A1L8GMJ1	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A1L8H9B9	Ptges3.L	A0A1L8H9B9	A0A1L8HHY2	Uncharacterized protein.	CS domain-containing protein.	0.576
A0A1L8H9B9	Ptges3l.L	A0A1L8H9B9	A0A1L8ETS1	Uncharacterized protein.	CS domain-containing protein.	0.588
A0A1L8H9B9	cacybp	A0A1L8H9B9	Q7ZWU4	Uncharacterized protein.	Sip-prov protein.	0.426
A0A1L8H9B9	chordc1	A0A1L8H9B9	A0A1L8HB14	Uncharacterized protein.	Uncharacterized protein.	0.779
A0A1L8H9B9	itgb1bp2	A0A1L8H9B9	A0A1L8F740	Uncharacterized protein.	Uncharacterized protein.	0.779
Cacybp.L	A0A1L8H9B9	A0A1L8GMJ1	A0A1L8H9B9	Uncharacterized protein.	Uncharacterized protein.	0.426
Cacybp.L	cacybp	A0A1L8GMJ1	Q7ZWU4	Uncharacterized protein.	Sip-prov protein.	0.900
Cacybp.L	chordc1	A0A1L8GMJ1	A0A1L8HB14	Uncharacterized protein.	Uncharacterized protein.	0.424
Cacybp.L	sugt1	A0A1L8GMJ1	A0A1L8HHK1	Uncharacterized protein.	Uncharacterized protein.	0.426
Nudc.S	Nudcd1.S	A0A1L8H7G7	A0A1L8FTR8	CS domain-containing protein.	CS domain-containing protein.	0.449
Nudc.S	Ptges3.L	A0A1L8H7G7	A0A1L8HHY2	CS domain-containing protein.	CS domain-containing protein.	0.631
Nudc.S	Ptges3l.L	A0A1L8H7G7	A0A1L8ETS1	CS domain-containing protein.	CS domain-containing protein.	0.561
Nudcd1.S	Nudc.S	A0A1L8FTR8	A0A1L8H7G7	CS domain-containing protein.	CS domain-containing protein.	0.449
Nudcd1.S	nudc	A0A1L8FTR8	Q6IRP6	CS domain-containing protein.	MGC83068 protein.	0.449
Nudcd1.S	nudcd2	A0A1L8FTR8	Q5M992	CS domain-containing protein.	LOC496162 protein.	0.445
Ptges3.L	A0A1L8H9B9	A0A1L8HHY2	A0A1L8H9B9	CS domain-containing protein.	Uncharacterized protein.	0.576
Ptges3.L	Nudc.S	A0A1L8HHY2	A0A1L8H7G7	CS domain-containing protein.	CS domain-containing protein.	0.631
Ptges3.L	chordc1	A0A1L8HHY2	A0A1L8HB14	CS domain-containing protein.	Uncharacterized protein.	0.508
Ptges3.L	dnaaf4	A0A1L8HHY2	A0A1L8H0M0	CS domain-containing protein.	Uncharacterized protein.	0.470