11 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Stmn1.S	Uncharacterized protein. (242 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	map4	Microtubule-associated protein. (1211 aa)
	Map4.L	Microtubule-associated protein. (1234 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	ckap5	Uncharacterized protein. (2065 aa)
	kif2c	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (730 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Map4.L	Stmn1.S	A0A1L8FUT9	A0A1L8H795	Microtubule-associated protein.	Uncharacterized protein.	0.745
Map4.L	ckap5	A0A1L8FUT9	A0A1L8GIT7	Microtubule-associated protein.	Uncharacterized protein.	0.889
Map4.L	kif2c	A0A1L8FUT9	A0A1L8GM91	Microtubule-associated protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.442
Map4.L	stmn1	A0A1L8FUT9	A0A1L8HEF1	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.759
Map4.L	stmn2	A0A1L8FUT9	A0A1L8FZA7	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.630
Map4.L	stmn2-2	A0A1L8FUT9	Q6DJD4	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.667
Map4.L	stmn3	A0A1L8FUT9	Q4KLA7	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.676
Map4.L	stmn3-2	A0A1L8FUT9	Q8AVQ7	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.676
Map4.L	stmn4	A0A1L8FUT9	A0A1L8G5Z4	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.599
Stmn1.S	Map4.L	A0A1L8H795	A0A1L8FUT9	Uncharacterized protein.	Microtubule-associated protein.	0.745
Stmn1.S	ckap5	A0A1L8H795	A0A1L8GIT7	Uncharacterized protein.	Uncharacterized protein.	0.822
Stmn1.S	kif2c	A0A1L8H795	A0A1L8GM91	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.891
Stmn1.S	map4	A0A1L8H795	A0A1L8FQC1	Uncharacterized protein.	Microtubule-associated protein.	0.683
Stmn1.S	stmn1	A0A1L8H795	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.900
ckap5	Map4.L	A0A1L8GIT7	A0A1L8FUT9	Uncharacterized protein.	Microtubule-associated protein.	0.889
ckap5	Stmn1.S	A0A1L8GIT7	A0A1L8H795	Uncharacterized protein.	Uncharacterized protein.	0.822
ckap5	kif2c	A0A1L8GIT7	A0A1L8GM91	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.966
ckap5	map4	A0A1L8GIT7	A0A1L8FQC1	Uncharacterized protein.	Microtubule-associated protein.	0.884
ckap5	stmn1	A0A1L8GIT7	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.824
ckap5	stmn2	A0A1L8GIT7	A0A1L8FZA7	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.677