30 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ctnnb1	Beta-catenin protein. (781 aa)
	snap25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (206 aa)
	vamp7-2	Sybl1-prov protein; Belongs to the synaptobrevin family. (220 aa)
	rab3b	MGC84786 protein. (217 aa)
	tjp3-2	MGC52795 protein; Belongs to the MAGUK family. (1010 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	snap25-2	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (206 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (204 aa)
	tfrc	Uncharacterized protein. (775 aa)
	Vapa.L	MSP domain-containing protein. (236 aa)
	pard3-2	Uncharacterized protein. (1332 aa)
	Scrib.S	Uncharacterized protein. (1826 aa)
	Ngfr.S	Uncharacterized protein. (388 aa)
	cgn-2	Myosin_tail_1 domain-containing protein. (1368 aa)
	cgn	Myosin_tail_1 domain-containing protein. (1368 aa)
	sympk	Uncharacterized protein. (1202 aa)
	vamp7	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	erbb2	Receptor protein-tyrosine kinase. (1299 aa)
	Llgl1.S	WD_REPEATS_REGION domain-containing protein. (999 aa)
	pard6b	Uncharacterized protein. (377 aa)
	Rho.L	Rhodopsin. (459 aa)
	tfrc-2	Uncharacterized protein. (775 aa)
	anpep	Aminopeptidase. (991 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	Anpep.L	Aminopeptidase. (963 aa)
	tjp3	Uncharacterized protein; Belongs to the MAGUK family. (1025 aa)
	Tjp2.L	Uncharacterized protein. (430 aa)
	rab13	LOC100158399 protein. (201 aa)
	rac1	MGC114731 protein. (192 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Anpep.L	anpep	A0A1L8H0V0	A0A1L8GSN4	Aminopeptidase.	Aminopeptidase.	0.900
Anpep.L	tfrc	A0A1L8H0V0	A0A1L8G3V8	Aminopeptidase.	Uncharacterized protein.	0.418
Anpep.L	tfrc-2	A0A1L8H0V0	A0A1L8G9X7	Aminopeptidase.	Uncharacterized protein.	0.418
Llgl1.S	Scrib.S	A0A1L8ER29	A0A1L8FUA2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.978
Llgl1.S	Tjp1.S	A0A1L8ER29	A0A1L8H090	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.432
Llgl1.S	actl6a	A0A1L8ER29	Q7ZYI5	WD_REPEATS_REGION domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.497
Llgl1.S	ctnnb1	A0A1L8ER29	Q63ZT4	WD_REPEATS_REGION domain-containing protein.	Beta-catenin protein.	0.422
Llgl1.S	pard3-2	A0A1L8ER29	A0A1L8FVE8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.402
Llgl1.S	pard6b	A0A1L8ER29	A0A1L8ELH2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956
Llgl1.S	pard6b-2	A0A1L8ER29	A0A1L8ESP6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956
Llgl1.S	snap23	A0A1L8ER29	Q8JIS7	WD_REPEATS_REGION domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.480
Llgl1.S	snap25	A0A1L8ER29	Q640W4	WD_REPEATS_REGION domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.685
Llgl1.S	snap25-2	A0A1L8ER29	Q8AXM1	WD_REPEATS_REGION domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.685
Rho.L	Tjp1.S	A0A1L8GPJ9	A0A1L8H090	Rhodopsin.	Uncharacterized protein; Belongs to the MAGUK family.	0.522
Rho.L	actl6a	A0A1L8GPJ9	Q7ZYI5	Rhodopsin.	Baf53a-pending-prov protein; Belongs to the actin family.	0.928
Rho.L	ctnnb1	A0A1L8GPJ9	Q63ZT4	Rhodopsin.	Beta-catenin protein.	0.744
Rho.L	pard6b	A0A1L8GPJ9	A0A1L8ELH2	Rhodopsin.	Uncharacterized protein.	0.550
Rho.L	pard6b-2	A0A1L8GPJ9	A0A1L8ESP6	Rhodopsin.	Uncharacterized protein.	0.550
Rho.L	rac1	A0A1L8GPJ9	Q58E25	Rhodopsin.	MGC114731 protein.	0.958
Scrib.S	Llgl1.S	A0A1L8FUA2	A0A1L8ER29	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.978