5 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Musk.S	Uncharacterized protein. (942 aa)
	A0A1L8FLY9	Uncharacterized protein. (1971 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	A0A1L8FG40	Uncharacterized protein. (2091 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FG40	A0A1L8FLY9	A0A1L8FG40	A0A1L8FLY9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8FG40	Musk.S	A0A1L8FG40	A0A1L8HNT6	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A1L8FLY9	A0A1L8FG40	A0A1L8FLY9	A0A1L8FG40	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8FLY9	Musk.S	A0A1L8FLY9	A0A1L8HNT6	Uncharacterized protein.	Uncharacterized protein.	0.989
Musk.S	A0A1L8FG40	A0A1L8HNT6	A0A1L8FG40	Uncharacterized protein.	Uncharacterized protein.	0.989
Musk.S	A0A1L8FLY9	A0A1L8HNT6	A0A1L8FLY9	Uncharacterized protein.	Uncharacterized protein.	0.989
Musk.S	Ptpn11.S	A0A1L8HNT6	Q92124	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.454
Musk.S	ptpn11b	A0A1L8HNT6	Q6GP31	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.458
Ptpn11.S	Musk.S	Q92124	A0A1L8HNT6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Uncharacterized protein.	0.454
ptpn11b	Musk.S	Q6GP31	A0A1L8HNT6	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Uncharacterized protein.	0.458