23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Myc.S	Myc_N domain-containing protein. (176 aa)
	Cyct.L	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (136 aa)
	stat3.1	Signal transducer and activator of transcription. (769 aa)
	cyct	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
	lgals4.2	Galectin. (319 aa)
	Lgals4.L	Galectin. (319 aa)
	cycs	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
	Bcl2.S	BH4_2 domain-containing protein. (253 aa)
	A0A1L8FW52	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	Cdkn1b.S	Uncharacterized protein. (152 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	Comt.S	Catechol O-methyltransferase; Catalyzes the O-methylation, and thereby the inactivation, of catecholamine neurotransmitters and catechol hormones. (214 aa)
	src	Tyrosine-protein kinase. (532 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	myc	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (420 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	ccnd1	Ccnd1-prov protein; Belongs to the cyclin family. (291 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FW52	Bcl2.S	A0A1L8FW52	A0A1L8FSA4	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	BH4_2 domain-containing protein.	0.970
A0A1L8FW52	Gapdh.S	A0A1L8FW52	Q7ZY52	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Glyceraldehyde-3-phosphate dehydrogenase.	0.567
A0A1L8FW52	ccnd1	A0A1L8FW52	Q8AVQ4	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Ccnd1-prov protein; Belongs to the cyclin family.	0.402
A0A1L8FW52	gapdh	A0A1L8FW52	Q8AY70	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Glyceraldehyde-3-phosphate dehydrogenase.	0.567
A0A1L8FW52	myc	A0A1L8FW52	Q6NRN4	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.456
Bcl2.S	A0A1L8FW52	A0A1L8FSA4	A0A1L8FW52	BH4_2 domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.970
Bcl2.S	Cdkn1b.S	A0A1L8FSA4	A0A1L8GQW1	BH4_2 domain-containing protein.	Uncharacterized protein.	0.434
Bcl2.S	Cyct.L	A0A1L8FSA4	A0A1L8EP92	BH4_2 domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.970
Bcl2.S	Gapdh.S	A0A1L8FSA4	Q7ZY52	BH4_2 domain-containing protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.654
Bcl2.S	Myc.S	A0A1L8FSA4	A0A1L8FTW7	BH4_2 domain-containing protein.	Myc_N domain-containing protein.	0.791
Bcl2.S	ccnd1	A0A1L8FSA4	Q8AVQ4	BH4_2 domain-containing protein.	Ccnd1-prov protein; Belongs to the cyclin family.	0.865
Bcl2.S	cycs	A0A1L8FSA4	A0A1L8FR74	BH4_2 domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.970
Bcl2.S	cyct	A0A1L8FSA4	A0A1L8EWA6	BH4_2 domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.970
Bcl2.S	gapdh	A0A1L8FSA4	Q8AY70	BH4_2 domain-containing protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.654
Bcl2.S	myc	A0A1L8FSA4	Q6NRN4	BH4_2 domain-containing protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.819
Bcl2.S	src	A0A1L8FSA4	Q2TAR1	BH4_2 domain-containing protein.	Tyrosine-protein kinase.	0.617
Bcl2.S	stat3.1	A0A1L8FSA4	A0A1L8ERT1	BH4_2 domain-containing protein.	Signal transducer and activator of transcription.	0.821
Cdkn1b.S	Bcl2.S	A0A1L8GQW1	A0A1L8FSA4	Uncharacterized protein.	BH4_2 domain-containing protein.	0.434
Cdkn1b.S	Myc.S	A0A1L8GQW1	A0A1L8FTW7	Uncharacterized protein.	Myc_N domain-containing protein.	0.589
Cdkn1b.S	Stmn1.S	A0A1L8GQW1	A0A1L8H795	Uncharacterized protein.	Uncharacterized protein.	0.585