4 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	Arfgap3.L	Arf-GAP domain-containing protein. (525 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arfgap3.L	Prkci.L	A0A1L8GW20	A0A1L8GAK2	Arf-GAP domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.567
Arfgap3.L	pard6b	A0A1L8GW20	A0A1L8ELH2	Arf-GAP domain-containing protein.	Uncharacterized protein.	0.534
Arfgap3.L	pard6b-2	A0A1L8GW20	A0A1L8ESP6	Arf-GAP domain-containing protein.	Uncharacterized protein.	0.534
Prkci.L	Arfgap3.L	A0A1L8GAK2	A0A1L8GW20	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Arf-GAP domain-containing protein.	0.567
Prkci.L	pard6b	A0A1L8GAK2	A0A1L8ELH2	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
Prkci.L	pard6b-2	A0A1L8GAK2	A0A1L8ESP6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
pard6b	Arfgap3.L	A0A1L8ELH2	A0A1L8GW20	Uncharacterized protein.	Arf-GAP domain-containing protein.	0.534
pard6b	Prkci.L	A0A1L8ELH2	A0A1L8GAK2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.999
pard6b-2	Arfgap3.L	A0A1L8ESP6	A0A1L8GW20	Uncharacterized protein.	Arf-GAP domain-containing protein.	0.534
pard6b-2	Prkci.L	A0A1L8ESP6	A0A1L8GAK2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.999