13 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pard6b	Uncharacterized protein. (377 aa)
	gap43	Uncharacterized protein. (214 aa)
	H2B	Histone H2B; Belongs to the histone H2B family. (126 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	Xcen	Xcen protein. (172 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	atoh7	Atonal homolog 5a. (138 aa)
	Alb.S	Uncharacterized protein. (607 aa)
	Gap43.L	Uncharacterized protein. (212 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	pard3-2	Uncharacterized protein. (1332 aa)
	H2B-2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (233 aa)
	Kif3a.L	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (669 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alb.S	H2B	A0A1L8HMG9	Q92130	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.670
Alb.S	H2B-2	A0A1L8HMG9	A0A1L8G0X3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.675
Alb.S	actl6a	A0A1L8HMG9	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.882
Gap43.L	H2B	A0A1L8HC99	Q92130	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.424
Gap43.L	H2B-2	A0A1L8HC99	A0A1L8G0X3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.422
Gap43.L	actl6a	A0A1L8HC99	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.445
Gap43.L	atoh7	A0A1L8HC99	B7ZQX7	Uncharacterized protein.	Atonal homolog 5a.	0.568
H2B	Alb.S	Q92130	A0A1L8HMG9	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.670
H2B	Gap43.L	Q92130	A0A1L8HC99	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.424
H2B	H2B-2	Q92130	A0A1L8G0X3	Histone H2B; Belongs to the histone H2B family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.941
H2B	LOC100189571	Q92130	B7ZRX0	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.672
H2B	Xcen	Q92130	Q5XHJ4	Histone H2B; Belongs to the histone H2B family.	Xcen protein.	0.505
H2B	actl6a	Q92130	Q7ZYI5	Histone H2B; Belongs to the histone H2B family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.839
H2B	gap43	Q92130	A0A1L8H5S6	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.424
H2B-2	Alb.S	A0A1L8G0X3	A0A1L8HMG9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.675
H2B-2	Gap43.L	A0A1L8G0X3	A0A1L8HC99	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.422
H2B-2	H2B	A0A1L8G0X3	Q92130	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone H2B; Belongs to the histone H2B family.	0.941
H2B-2	LOC100189571	A0A1L8G0X3	B7ZRX0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.675
H2B-2	Xcen	A0A1L8G0X3	Q5XHJ4	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Xcen protein.	0.503
H2B-2	actl6a	A0A1L8G0X3	Q7ZYI5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Baf53a-pending-prov protein; Belongs to the actin family.	0.839