6 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sumo2	Small ubiquitin-related modifier. (95 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	Gsc.S	Homeobox domain-containing protein. (243 aa)
	gsc	Homeobox domain-containing protein. (294 aa)
	ubl3	Ubiquitin-like protein. (117 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Sumo1.L	sumo2	A0A1L8EWZ5	A0A1L8EMU2	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.701
Sumo1.L	ubl3	A0A1L8EWZ5	Q6GNJ9	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein.	0.708
Sumo1.S	sumo2	A0A1L8EPQ0	A0A1L8EMU2	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.701
Sumo1.S	ubl3	A0A1L8EPQ0	Q6GNJ9	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein.	0.708
sumo2	Sumo1.L	A0A1L8EMU2	A0A1L8EWZ5	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.701
sumo2	Sumo1.S	A0A1L8EMU2	A0A1L8EPQ0	Small ubiquitin-related modifier.	Ubiquitin-like domain-containing protein.	0.701
sumo2	ubl3	A0A1L8EMU2	Q6GNJ9	Small ubiquitin-related modifier.	Ubiquitin-like protein.	0.786
ubl3	Sumo1.L	Q6GNJ9	A0A1L8EWZ5	Ubiquitin-like protein.	Ubiquitin-like domain-containing protein.	0.708
ubl3	Sumo1.S	Q6GNJ9	A0A1L8EPQ0	Ubiquitin-like protein.	Ubiquitin-like domain-containing protein.	0.708
ubl3	sumo2	Q6GNJ9	A0A1L8EMU2	Ubiquitin-like protein.	Small ubiquitin-related modifier.	0.786