19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	A0A1L8EYQ3	LLGL domain-containing protein. (1049 aa)
	A0A1L8EZU6	PID domain-containing protein. (642 aa)
	sos2	Uncharacterized protein. (1335 aa)
	NumbL	PID domain-containing protein. (588 aa)
	lgals4.2	Galectin. (319 aa)
	A0A1L8F8U7	PID domain-containing protein. (588 aa)
	Lgals4.L	Galectin. (319 aa)
	sos2-2	Uncharacterized protein. (1332 aa)
	numbl	PID domain-containing protein. (651 aa)
	Scrib.S	Uncharacterized protein. (1826 aa)
	sos1	Uncharacterized protein. (1325 aa)
	sos1-2	Uncharacterized protein. (1325 aa)
	eps15	Uncharacterized protein. (971 aa)
	eps15-2	Uncharacterized protein. (980 aa)
	casp3.2	Uncharacterized protein; Belongs to the peptidase C14A family. (288 aa)
	Casp3.L	Uncharacterized protein; Belongs to the peptidase C14A family. (253 aa)
	src	Tyrosine-protein kinase. (532 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EYQ3	A0A1L8EZU6	A0A1L8EYQ3	A0A1L8EZU6	LLGL domain-containing protein.	PID domain-containing protein.	0.542
A0A1L8EYQ3	A0A1L8F8U7	A0A1L8EYQ3	A0A1L8F8U7	LLGL domain-containing protein.	PID domain-containing protein.	0.542
A0A1L8EYQ3	NumbL	A0A1L8EYQ3	A0A1L8F3U1	LLGL domain-containing protein.	PID domain-containing protein.	0.542
A0A1L8EYQ3	Scrib.S	A0A1L8EYQ3	A0A1L8FUA2	LLGL domain-containing protein.	Uncharacterized protein.	0.902
A0A1L8EYQ3	numbl	A0A1L8EYQ3	A0A1L8FAF0	LLGL domain-containing protein.	PID domain-containing protein.	0.539
A0A1L8EYQ3	pard6b	A0A1L8EYQ3	A0A1L8ELH2	LLGL domain-containing protein.	Uncharacterized protein.	0.957
A0A1L8EYQ3	pard6b-2	A0A1L8EYQ3	A0A1L8ESP6	LLGL domain-containing protein.	Uncharacterized protein.	0.957
A0A1L8EZU6	A0A1L8EYQ3	A0A1L8EZU6	A0A1L8EYQ3	PID domain-containing protein.	LLGL domain-containing protein.	0.542
A0A1L8EZU6	eps15	A0A1L8EZU6	A0A1L8GG06	PID domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8EZU6	eps15-2	A0A1L8EZU6	A0A1L8GMJ7	PID domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8EZU6	pard6b	A0A1L8EZU6	A0A1L8ELH2	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8EZU6	pard6b-2	A0A1L8EZU6	A0A1L8ESP6	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8F8U7	A0A1L8EYQ3	A0A1L8F8U7	A0A1L8EYQ3	PID domain-containing protein.	LLGL domain-containing protein.	0.542
A0A1L8F8U7	eps15	A0A1L8F8U7	A0A1L8GG06	PID domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8F8U7	eps15-2	A0A1L8F8U7	A0A1L8GMJ7	PID domain-containing protein.	Uncharacterized protein.	0.715
A0A1L8F8U7	pard6b	A0A1L8F8U7	A0A1L8ELH2	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8F8U7	pard6b-2	A0A1L8F8U7	A0A1L8ESP6	PID domain-containing protein.	Uncharacterized protein.	0.774
Casp3.L	Lgals4.L	A0A1L8HU08	A0A1L8F924	Uncharacterized protein; Belongs to the peptidase C14A family.	Galectin.	0.489
Casp3.L	casp3.2	A0A1L8HU08	A0A1L8HLJ6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.901
Casp3.L	lgals4.2	A0A1L8HU08	A0A1L8F404	Uncharacterized protein; Belongs to the peptidase C14A family.	Galectin.	0.489