30 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atoh7	Atonal homolog 5a. (138 aa)
	Nme4.S	Nucleoside diphosphate kinase. (180 aa)
	Calb1.S	Uncharacterized protein. (316 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	odc1	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (460 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	Cdkn1b.S	Uncharacterized protein. (152 aa)
	rlbp1	CRAL-TRIO domain-containing protein. (317 aa)
	Nme6.S	NDK domain-containing protein; Belongs to the NDK family. (157 aa)
	neurog1	BHLH domain-containing protein. (229 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (353 aa)
	cdkn1a	Uncharacterized protein. (261 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	A0A1L8HFR2	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (440 aa)
	rp2-2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (357 aa)
	Kit.S	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (963 aa)
	Kit.L	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (964 aa)
	Azin2.S	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (456 aa)
	A0A310U7C2	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (344 aa)
	Calb1	Calbindin D28k. (260 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	myc	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (420 aa)
	rlbp1-2	Rlbp1-prov protein. (317 aa)
	rhoa	MGC64296 protein. (193 aa)
	odc1-2	Odc1-prov protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (460 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	cdknx	Cyclin-dependent kinase inhibitor p28. (209 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8HFR2	myc	A0A1L8HFR2	Q6NRN4	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.432
A0A310U7C2	myc	A0A310U7C2	Q6NRN4	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.432
Azin2.S	myc	A0A310TQU5	Q6NRN4	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.432
Calb1	Nme4.S	B7ZSJ2	A0A1L8EQQ4	Calbindin D28k.	Nucleoside diphosphate kinase.	0.406
Calb1	actl6a	B7ZSJ2	Q7ZYI5	Calbindin D28k.	Baf53a-pending-prov protein; Belongs to the actin family.	0.457
Calb1	atoh7	B7ZSJ2	B7ZQX7	Calbindin D28k.	Atonal homolog 5a.	0.431
Calb1	rlbp1	B7ZSJ2	A0A1L8GSJ0	Calbindin D28k.	CRAL-TRIO domain-containing protein.	0.595
Calb1	rlbp1-2	B7ZSJ2	Q7SYZ4	Calbindin D28k.	Rlbp1-prov protein.	0.595
Calb1.S	Nme4.S	A0A1L8FTI0	A0A1L8EQQ4	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.418
Calb1.S	actl6a	A0A1L8FTI0	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.433
Calb1.S	atoh7	A0A1L8FTI0	B7ZQX7	Uncharacterized protein.	Atonal homolog 5a.	0.432
Calb1.S	rlbp1	A0A1L8FTI0	A0A1L8GSJ0	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.638
Calb1.S	rlbp1-2	A0A1L8FTI0	Q7SYZ4	Uncharacterized protein.	Rlbp1-prov protein.	0.638
Cdkn1b.S	Stmn1.S	A0A1L8GQW1	A0A1L8H795	Uncharacterized protein.	Uncharacterized protein.	0.585
Cdkn1b.S	actl6a	A0A1L8GQW1	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.436
Cdkn1b.S	myc	A0A1L8GQW1	Q6NRN4	Uncharacterized protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.619
Cdkn1b.S	rhoa	A0A1L8GQW1	Q7SZA9	Uncharacterized protein.	MGC64296 protein.	0.764
Cdkn1b.S	stmn1	A0A1L8GQW1	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.715
Cdkn1b.S	stmn2	A0A1L8GQW1	A0A1L8FZA7	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.566
Cdkn1b.S	stmn2-2	A0A1L8GQW1	Q6DJD4	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.576