28 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ski-2	c-SKI_SMAD_bind domain-containing protein. (717 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	sumo2-2	Ubiquitin-like domain-containing protein. (98 aa)
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	tgfb1-2	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	tfap2a	TF_AP-2 domain-containing protein. (470 aa)
	Hsf1.S	HSF_DOMAIN domain-containing protein. (894 aa)
	Tfap2a.L	TF_AP-2 domain-containing protein. (472 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (413 aa)
	Myb.S	Uncharacterized protein. (626 aa)
	tgfb2-2	Transforming growth factor beta; Belongs to the TGF-beta family. (413 aa)
	Rangap1.S	RanGAP1_C domain-containing protein. (583 aa)
	Jun.L	BZIP domain-containing protein; Belongs to the bZIP family. (314 aa)
	Tp53.L	P53 domain-containing protein. (137 aa)
	nck2	Cytoplasmic protein. (381 aa)
	nck2-2	Cytoplasmic protein. (381 aa)
	HSF2	HSF2 protein. (515 aa)
	nf-at	Nuclear factor of activated T-cell. (884 aa)
	nck1	Cytoplasmic protein. (377 aa)
	nck1-2	Cytoplasmic protein. (377 aa)
	ubl3	Ubiquitin-like protein. (117 aa)
	acta2	MGC78870 protein. (377 aa)
	rangap1	Rangap1-prov protein. (584 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	hspa1l	Hsc70 protein; Belongs to the heat shock protein 70 family. (650 aa)
	c-Jun	C-Jun protein; Belongs to the bZIP family. (312 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HSF2	Hsf1.S	A0JMX1	A0A1L8FU64	HSF2 protein.	HSF_DOMAIN domain-containing protein.	0.577
HSF2	Sumo1.L	A0JMX1	A0A1L8EWZ5	HSF2 protein.	Ubiquitin-like domain-containing protein.	0.503
HSF2	Sumo1.S	A0JMX1	A0A1L8EPQ0	HSF2 protein.	Ubiquitin-like domain-containing protein.	0.503
HSF2	hspa1l	A0JMX1	Q8AVE2	HSF2 protein.	Hsc70 protein; Belongs to the heat shock protein 70 family.	0.722
HSF2	sumo2	A0JMX1	A0A1L8EMU2	HSF2 protein.	Small ubiquitin-related modifier.	0.553
Hsf1.S	HSF2	A0A1L8FU64	A0JMX1	HSF_DOMAIN domain-containing protein.	HSF2 protein.	0.577
Hsf1.S	Sumo1.L	A0A1L8FU64	A0A1L8EWZ5	HSF_DOMAIN domain-containing protein.	Ubiquitin-like domain-containing protein.	0.452
Hsf1.S	Sumo1.S	A0A1L8FU64	A0A1L8EPQ0	HSF_DOMAIN domain-containing protein.	Ubiquitin-like domain-containing protein.	0.452
Hsf1.S	hspa1l	A0A1L8FU64	Q8AVE2	HSF_DOMAIN domain-containing protein.	Hsc70 protein; Belongs to the heat shock protein 70 family.	0.813
Hsf1.S	sumo2	A0A1L8FU64	A0A1L8EMU2	HSF_DOMAIN domain-containing protein.	Small ubiquitin-related modifier.	0.449
Jun.L	Myb.S	A0A1L8GLZ4	A0A1L8G2N9	BZIP domain-containing protein; Belongs to the bZIP family.	Uncharacterized protein.	0.409
Jun.L	Tfap2a.L	A0A1L8GLZ4	A0A1L8FXY3	BZIP domain-containing protein; Belongs to the bZIP family.	TF_AP-2 domain-containing protein.	0.593
Jun.L	Tp53.L	A0A1L8GLZ4	A0A1L8H4M6	BZIP domain-containing protein; Belongs to the bZIP family.	P53 domain-containing protein.	0.893
Jun.L	actl6a	A0A1L8GLZ4	Q7ZYI5	BZIP domain-containing protein; Belongs to the bZIP family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.699
Jun.L	c-Jun	A0A1L8GLZ4	Q9PVZ1	BZIP domain-containing protein; Belongs to the bZIP family.	C-Jun protein; Belongs to the bZIP family.	0.958
Jun.L	nck1	A0A1L8GLZ4	P79956	BZIP domain-containing protein; Belongs to the bZIP family.	Cytoplasmic protein.	0.435
Jun.L	nck1-2	A0A1L8GLZ4	Q32NQ4	BZIP domain-containing protein; Belongs to the bZIP family.	Cytoplasmic protein.	0.435
Jun.L	nf-at	A0A1L8GLZ4	B7ZQA4	BZIP domain-containing protein; Belongs to the bZIP family.	Nuclear factor of activated T-cell.	0.888
Jun.L	sumo2	A0A1L8GLZ4	A0A1L8EMU2	BZIP domain-containing protein; Belongs to the bZIP family.	Small ubiquitin-related modifier.	0.614
Jun.L	sumo2-2	A0A1L8GLZ4	A0A1L8EUK7	BZIP domain-containing protein; Belongs to the bZIP family.	Ubiquitin-like domain-containing protein.	0.491