18 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tead4	MGC81567 protein. (433 aa)
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	Pou5f3.1	POU domain protein. (445 aa)
	pou5f3.2	POU domain protein. (449 aa)
	pard3	Uncharacterized protein. (1369 aa)
	pard3-2	Uncharacterized protein. (1332 aa)
	fgf4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (192 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	Fgf4.L	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (235 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	Tjp2.L	Uncharacterized protein. (430 aa)
	LOC398065	LOC398065 protein. (666 aa)
	Tbx1	T-box transcription factor. (463 aa)
	cdx2	MGC130987 protein. (256 aa)
	cdx2-2	Homeobox domain-containing protein. (254 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdh3.S	Pou5f3.1	A0A1L8GET9	A0A1L8F5T5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	POU domain protein.	0.618
Cdh3.S	Tjp1.S	A0A1L8GET9	A0A1L8H090	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
Cdh3.S	Tjp2.L	A0A1L8GET9	A0A1L8HYU8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.642
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	pard6b	A0A1L8GET9	A0A1L8ELH2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	pard6b-2	A0A1L8GET9	A0A1L8ESP6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	pou5f3.2	A0A1L8GET9	A0A1L8F5T8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	POU domain protein.	0.610
Fgf4.L	LOC398065	A0A1L8GIU8	A0JMS3	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	LOC398065 protein.	0.531
Fgf4.L	Pou5f3.1	A0A1L8GIU8	A0A1L8F5T5	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	POU domain protein.	0.622
Fgf4.L	Tbx1	A0A1L8GIU8	B7ZRC1	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	T-box transcription factor.	0.428
Fgf4.L	cdx2	A0A1L8GIU8	Q2T9K7	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	MGC130987 protein.	0.573
Fgf4.L	cdx2-2	A0A1L8GIU8	Q32NJ4	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox domain-containing protein.	0.573
Fgf4.L	pou5f3.2	A0A1L8GIU8	A0A1L8F5T8	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	POU domain protein.	0.637
Fgf4.L	tead4	A0A1L8GIU8	Q641H5	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	MGC81567 protein.	0.426
LOC398065	Fgf4.L	A0JMS3	A0A1L8GIU8	LOC398065 protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.531
LOC398065	Pou5f3.1	A0JMS3	A0A1L8F5T5	LOC398065 protein.	POU domain protein.	0.779
LOC398065	cdx2	A0JMS3	Q2T9K7	LOC398065 protein.	MGC130987 protein.	0.840
LOC398065	cdx2-2	A0JMS3	Q32NJ4	LOC398065 protein.	Homeobox domain-containing protein.	0.840
LOC398065	fgf4	A0JMS3	A0A1L8GDV2	LOC398065 protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.523