17 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	fzd2	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (551 aa)
	pard6b	Uncharacterized protein. (377 aa)
	Llgl1.S	WD_REPEATS_REGION domain-containing protein. (999 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	lgals4.2	Galectin. (319 aa)
	Lgals4.L	Galectin. (319 aa)
	Fzd6.S	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (715 aa)
	Scrib.S	Uncharacterized protein. (1826 aa)
	Shh.L	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (444 aa)
	fzd6	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (724 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	patj	Uncharacterized protein. (1796 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdh3.S	Lgals4.L	A0A1L8GET9	A0A1L8F924	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Galectin.	0.539
Cdh3.S	Prkci.L	A0A1L8GET9	A0A1L8GAK2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.694
Cdh3.S	Scrib.S	A0A1L8GET9	A0A1L8FUA2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.600
Cdh3.S	Shh.L	A0A1L8GET9	A0A1L8FV87	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.579
Cdh3.S	actl6a	A0A1L8GET9	Q7ZYI5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Baf53a-pending-prov protein; Belongs to the actin family.	0.931
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	ctnnb1	A0A1L8GET9	Q63ZT4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Beta-catenin protein.	0.999
Cdh3.S	lgals4.2	A0A1L8GET9	A0A1L8F404	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Galectin.	0.540
Cdh3.S	pard6b	A0A1L8GET9	A0A1L8ELH2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	pard6b-2	A0A1L8GET9	A0A1L8ESP6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	patj	A0A1L8GET9	A0A1L8GLZ0	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.406
Fzd6.S	Scrib.S	A0A1L8FTP5	A0A1L8FUA2	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein.	0.630
Fzd6.S	Shh.L	A0A1L8FTP5	A0A1L8FV87	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.484
Fzd6.S	actl6a	A0A1L8FTP5	Q7ZYI5	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.423
Fzd6.S	ctnnb1	A0A1L8FTP5	Q63ZT4	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Beta-catenin protein.	0.803
Fzd6.S	fzd2	A0A1L8FTP5	A0A1L8EL29	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.445
Lgals4.L	Cdh3.S	A0A1L8F924	A0A1L8GET9	Galectin.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.539
Lgals4.L	Shh.L	A0A1L8F924	A0A1L8FV87	Galectin.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.449
Lgals4.L	actl6a	A0A1L8F924	Q7ZYI5	Galectin.	Baf53a-pending-prov protein; Belongs to the actin family.	0.871