29 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rho.L	Rhodopsin. (459 aa)
	pax6-2	Uncharacterized protein. (467 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	pax6	Uncharacterized protein. (467 aa)
	wnt3a	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	Sox2.S	HMG box domain-containing protein. (194 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	neurod1	Neurogenic differentiation factor. (352 aa)
	otx2	Homeobox domain-containing protein. (288 aa)
	A0A1L8EZV1	Uncharacterized protein. (364 aa)
	Vsx2.L	Uncharacterized protein. (344 aa)
	Crx.L	Homeobox domain-containing protein. (290 aa)
	crx	Homeobox domain-containing protein. (290 aa)
	otx2-2	Homeobox domain-containing protein. (289 aa)
	Siglec1.L	Uncharacterized protein. (1664 aa)
	Egf.L	Uncharacterized protein. (1031 aa)
	Arrb2.L	Arrestin_C domain-containing protein. (446 aa)
	Opsin	Rhodopsin. (403 aa)
	fgf2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	prph2	MGC64379 protein. (350 aa)
	fgf2-2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	l-maf-A	BZIP transcription factor L-Maf. (267 aa)
	rcvrn.2	MGC84117 protein. (192 aa)
	prph-2	Peripherin-2. (346 aa)
	neurod1-2	Neurogenic differentiation factor. (357 aa)
	MGC84108	MGC84108 protein. (364 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)
	A0A1L8HKF4	Uncharacterized protein. (985 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	A0A1L8EZV1	A0A1L8EN80	A0A1L8EZV1	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EN80	Arrb2.L	A0A1L8EN80	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EN80	Crx.L	A0A1L8EN80	A0A1L8F3X7	Uncharacterized protein.	Homeobox domain-containing protein.	0.795
A0A1L8EN80	MGC84108	A0A1L8EN80	Q6GLY9	Uncharacterized protein.	MGC84108 protein.	0.506
A0A1L8EN80	Opsin	A0A1L8EN80	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EN80	Rho.L	A0A1L8EN80	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.934
A0A1L8EN80	Sox2.S	A0A1L8EN80	A0A1L8EK54	Uncharacterized protein.	HMG box domain-containing protein.	0.444
A0A1L8EN80	Vsx2.L	A0A1L8EN80	A0A1L8F0U1	Uncharacterized protein.	Uncharacterized protein.	0.834
A0A1L8EN80	crx	A0A1L8EN80	A0A1L8F901	Uncharacterized protein.	Homeobox domain-containing protein.	0.798
A0A1L8EN80	fgf2	A0A1L8EN80	A0A1L8HLX5	Uncharacterized protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.409
A0A1L8EN80	l-maf-A	A0A1L8EN80	B7ZRB4	Uncharacterized protein.	BZIP transcription factor L-Maf.	0.480
A0A1L8EN80	otx2	A0A1L8EN80	A0A1L8EZU9	Uncharacterized protein.	Homeobox domain-containing protein.	0.576
A0A1L8EN80	otx2-2	A0A1L8EN80	A0A1L8FAB9	Uncharacterized protein.	Homeobox domain-containing protein.	0.576
A0A1L8EN80	pax6	A0A1L8EN80	A0A1L8GDT8	Uncharacterized protein.	Uncharacterized protein.	0.700
A0A1L8EN80	pax6-2	A0A1L8EN80	A0A1L8GJ29	Uncharacterized protein.	Uncharacterized protein.	0.699
A0A1L8EN80	prph-2	A0A1L8EN80	Q8UUU5	Uncharacterized protein.	Peripherin-2.	0.449
A0A1L8EN80	prph2	A0A1L8EN80	Q7SY89	Uncharacterized protein.	MGC64379 protein.	0.449
A0A1L8EUU9	A0A1L8EZV1	A0A1L8EUU9	A0A1L8EZV1	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956