34 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Tp53.L	P53 domain-containing protein. (137 aa)
	cdkn1a	Uncharacterized protein. (261 aa)
	Racgap1.L	Uncharacterized protein. (629 aa)
	vegfa	Vascular endothelial growth factor 196; Belongs to the PDGF/VEGF growth factor family. (194 aa)
	rhob	MGC131029 protein. (196 aa)
	rabif	MGC115104 protein. (118 aa)
	rac1	MGC114731 protein. (192 aa)
	rhog	MGC68933 protein. (191 aa)
	rhoa	MGC64296 protein. (193 aa)
	rhoc	MGC52893 protein. (193 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	klf9	Basic transcription element binding protein 1. (292 aa)
	rac3	RAC1 protein. (192 aa)
	Plk1.S	Serine/threonine-protein kinase PLK. (598 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	plk1	Serine/threonine-protein kinase PLK. (598 aa)
	cdk1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (302 aa)
	Cdk1.L	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (590 aa)
	topbp1	Uncharacterized protein. (1573 aa)
	Ect2.S	Uncharacterized protein. (987 aa)
	plek	Uncharacterized protein. (350 aa)
	ect2	Uncharacterized protein. (986 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	Arhgap1.S	Uncharacterized protein. (473 aa)
	klhl20	BTB domain-containing protein. (609 aa)
	Arhgap1.L	Uncharacterized protein. (435 aa)
	klhl20-2	BTB domain-containing protein. (604 aa)
	Rho.L	Rhodopsin. (459 aa)
	xpc	Uncharacterized protein. (1062 aa)
	map2k1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (395 aa)
	kif23	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (962 aa)
	Racgap1.S	Uncharacterized protein. (629 aa)
	pard6b	Uncharacterized protein. (377 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arhgap1.L	Ect2.S	A0A1L8GIS6	A0A1L8G450	Uncharacterized protein.	Uncharacterized protein.	0.844
Arhgap1.L	Racgap1.L	A0A1L8GIS6	A0A1L8HIP3	Uncharacterized protein.	Uncharacterized protein.	0.439
Arhgap1.L	Racgap1.S	A0A1L8GIS6	A0A1L8HA98	Uncharacterized protein.	Uncharacterized protein.	0.461
Arhgap1.L	Rho.L	A0A1L8GIS6	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.477
Arhgap1.L	actl6a	A0A1L8GIS6	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.793
Arhgap1.L	ect2	A0A1L8GIS6	A0A1L8GAI2	Uncharacterized protein.	Uncharacterized protein.	0.844
Arhgap1.L	kif23	A0A1L8GIS6	A0A1L8H194	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.420
Arhgap1.L	plek	A0A1L8GIS6	A0A1L8G6R7	Uncharacterized protein.	Uncharacterized protein.	0.460
Arhgap1.L	rac1	A0A1L8GIS6	Q58E25	Uncharacterized protein.	MGC114731 protein.	0.813
Arhgap1.L	rac3	A0A1L8GIS6	Q9PW31	Uncharacterized protein.	RAC1 protein.	0.760
Arhgap1.L	rhoa	A0A1L8GIS6	Q7SZA9	Uncharacterized protein.	MGC64296 protein.	0.900
Arhgap1.L	rhob	A0A1L8GIS6	Q2TAR5	Uncharacterized protein.	MGC131029 protein.	0.795
Arhgap1.L	rhoc	A0A1L8GIS6	Q7ZWY1	Uncharacterized protein.	MGC52893 protein.	0.824
Arhgap1.L	rhog	A0A1L8GIS6	Q6PCJ6	Uncharacterized protein.	MGC68933 protein.	0.704
Arhgap1.S	Ect2.S	A0A1L8GE02	A0A1L8G450	Uncharacterized protein.	Uncharacterized protein.	0.844
Arhgap1.S	Racgap1.L	A0A1L8GE02	A0A1L8HIP3	Uncharacterized protein.	Uncharacterized protein.	0.440
Arhgap1.S	Racgap1.S	A0A1L8GE02	A0A1L8HA98	Uncharacterized protein.	Uncharacterized protein.	0.462
Arhgap1.S	Rho.L	A0A1L8GE02	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.477
Arhgap1.S	actl6a	A0A1L8GE02	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.793
Arhgap1.S	ect2	A0A1L8GE02	A0A1L8GAI2	Uncharacterized protein.	Uncharacterized protein.	0.844