25 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prph-2	Peripherin-2. (346 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	A0A1L8EZV1	Uncharacterized protein. (364 aa)
	Whrn.S	Uncharacterized protein. (988 aa)
	A0A1L8FEM2	Uncharacterized protein. (788 aa)
	prom1	Uncharacterized protein. (796 aa)
	Nphp1.L	SH3 domain-containing protein. (680 aa)
	dynlt1	Uncharacterized protein. (113 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	rom1	Uncharacterized protein. (345 aa)
	Abca4.L	Uncharacterized protein. (1776 aa)
	Rho.L	Rhodopsin. (459 aa)
	Opsin	Rhodopsin. (403 aa)
	Kif3a.L	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (669 aa)
	Arrb2.L	Arrestin_C domain-containing protein. (446 aa)
	Dync2h1.L	Uncharacterized protein. (2548 aa)
	Myo7a.L	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2177 aa)
	Proml-1	Uncharacterized protein. (890 aa)
	arf4	Arf4 protein; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	rcvrn.2	MGC84117 protein. (192 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)
	MGC84108	MGC84108 protein. (364 aa)
	prph2	MGC64379 protein. (350 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	A0A1L8EZV1	A0A1L8EN80	A0A1L8EZV1	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EN80	Arrb2.L	A0A1L8EN80	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EN80	MGC84108	A0A1L8EN80	Q6GLY9	Uncharacterized protein.	MGC84108 protein.	0.506
A0A1L8EN80	Opsin	A0A1L8EN80	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EN80	Rho.L	A0A1L8EN80	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.934
A0A1L8EN80	prph-2	A0A1L8EN80	Q8UUU5	Uncharacterized protein.	Peripherin-2.	0.449
A0A1L8EN80	prph2	A0A1L8EN80	Q7SY89	Uncharacterized protein.	MGC64379 protein.	0.449
A0A1L8EN80	rom1	A0A1L8EN80	A0A1L8GJU3	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A1L8EUU9	A0A1L8EZV1	A0A1L8EUU9	A0A1L8EZV1	Uncharacterized protein.	Uncharacterized protein.	0.449
A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EUU9	Arrb2.L	A0A1L8EUU9	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EUU9	MGC84108	A0A1L8EUU9	Q6GLY9	Uncharacterized protein.	MGC84108 protein.	0.449
A0A1L8EUU9	Opsin	A0A1L8EUU9	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EUU9	Rho.L	A0A1L8EUU9	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.933
A0A1L8EUU9	prph-2	A0A1L8EUU9	Q8UUU5	Uncharacterized protein.	Peripherin-2.	0.443
A0A1L8EUU9	prph2	A0A1L8EUU9	Q7SY89	Uncharacterized protein.	MGC64379 protein.	0.443
A0A1L8EUU9	rom1	A0A1L8EUU9	A0A1L8GJU3	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A1L8EZV1	A0A1L8EN80	A0A1L8EZV1	A0A1L8EN80	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A1L8EZV1	A0A1L8EUU9	A0A1L8EZV1	A0A1L8EUU9	Uncharacterized protein.	Uncharacterized protein.	0.449