23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8H034	Uncharacterized protein. (2543 aa)
	ntn1	Uncharacterized protein. (602 aa)
	ntn3	Uncharacterized protein. (588 aa)
	ntn1-2	Uncharacterized protein. (602 aa)
	ntn3-2	Uncharacterized protein. (588 aa)
	A0A1L8F1S1	Uncharacterized protein. (2617 aa)
	ntn5	Uncharacterized protein. (601 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (947 aa)
	rtn4	Reticulon. (1043 aa)
	rtn4-2	Reticulon. (1024 aa)
	itfg1	Uncharacterized protein. (601 aa)
	Rho.L	Rhodopsin. (459 aa)
	A0A1L8GTE5	Uncharacterized protein. (2543 aa)
	A0A1L8GTK8	Uncharacterized protein. (2691 aa)
	flnc	Uncharacterized protein. (2691 aa)
	A0A1L8I385	Uncharacterized protein. (2303 aa)
	Tln2.S	Uncharacterized protein. (2612 aa)
	Flnb.L	Uncharacterized protein. (2603 aa)
	ntn5-2	LOC100127305 protein. (601 aa)
	src	Tyrosine-protein kinase. (532 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F1S1	A0A1L8GTE5	A0A1L8F1S1	A0A1L8GTE5	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A1L8F1S1	A0A1L8H034	A0A1L8F1S1	A0A1L8H034	Uncharacterized protein.	Uncharacterized protein.	0.859
A0A1L8F1S1	A0A1L8I385	A0A1L8F1S1	A0A1L8I385	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8F1S1	Tln2.S	A0A1L8F1S1	A0A310UCZ7	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8F1S1	actl6a	A0A1L8F1S1	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.980
A0A1L8GTE5	A0A1L8F1S1	A0A1L8GTE5	A0A1L8F1S1	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A1L8GTE5	A0A1L8GTK8	A0A1L8GTE5	A0A1L8GTK8	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8GTE5	Flnb.L	A0A1L8GTE5	A0A310UE08	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A1L8GTE5	Rho.L	A0A1L8GTE5	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.540
A0A1L8GTE5	actl6a	A0A1L8GTE5	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.959
A0A1L8GTE5	cdh2	A0A1L8GTE5	A0A1L8FSZ9	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.434
A0A1L8GTE5	flnc	A0A1L8GTE5	A0A1L8GZU4	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A1L8GTE5	src	A0A1L8GTE5	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.808
A0A1L8GTK8	A0A1L8GTE5	A0A1L8GTK8	A0A1L8GTE5	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8GTK8	A0A1L8H034	A0A1L8GTK8	A0A1L8H034	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8GTK8	A0A1L8I385	A0A1L8GTK8	A0A1L8I385	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8GTK8	Tln2.S	A0A1L8GTK8	A0A310UCZ7	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A1L8GTK8	actl6a	A0A1L8GTK8	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.982
A0A1L8H034	A0A1L8F1S1	A0A1L8H034	A0A1L8F1S1	Uncharacterized protein.	Uncharacterized protein.	0.859
A0A1L8H034	A0A1L8GTK8	A0A1L8H034	A0A1L8GTK8	Uncharacterized protein.	Uncharacterized protein.	0.858