7 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Stmn1.S	Uncharacterized protein. (242 aa)
	arhgef7	Uncharacterized protein. (818 aa)
	Dctn2.S	Uncharacterized protein. (406 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	arhgef7-2	Uncharacterized protein. (802 aa)
	Dctn2.L	Uncharacterized protein. (403 aa)
	numa1-2	Uncharacterized protein. (2309 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dctn2.L	arhgef7	A0A1L8HI61	A0A1L8H914	Uncharacterized protein.	Uncharacterized protein.	0.821
Dctn2.L	arhgef7-2	A0A1L8HI61	A0A1L8HH17	Uncharacterized protein.	Uncharacterized protein.	0.821
Dctn2.S	arhgef7	A0A1L8H9V8	A0A1L8H914	Uncharacterized protein.	Uncharacterized protein.	0.821
Dctn2.S	arhgef7-2	A0A1L8H9V8	A0A1L8HH17	Uncharacterized protein.	Uncharacterized protein.	0.821
Stmn1.S	stmn1	A0A1L8H795	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.900
arhgef7	Dctn2.L	A0A1L8H914	A0A1L8HI61	Uncharacterized protein.	Uncharacterized protein.	0.821
arhgef7	Dctn2.S	A0A1L8H914	A0A1L8H9V8	Uncharacterized protein.	Uncharacterized protein.	0.821
arhgef7-2	Dctn2.L	A0A1L8HH17	A0A1L8HI61	Uncharacterized protein.	Uncharacterized protein.	0.821
arhgef7-2	Dctn2.S	A0A1L8HH17	A0A1L8H9V8	Uncharacterized protein.	Uncharacterized protein.	0.821
stmn1	Stmn1.S	A0A1L8HEF1	A0A1L8H795	Stathmin; Belongs to the stathmin family.	Uncharacterized protein.	0.900