12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)
	rcvrn.2	MGC84117 protein. (192 aa)
	Arrb2.L	Arrestin_C domain-containing protein. (446 aa)
	calml4-2	Uncharacterized protein. (152 aa)
	calml4	Uncharacterized protein. (153 aa)
	Opsin	Rhodopsin. (403 aa)
	Rho.L	Rhodopsin. (459 aa)
	Gnat	Uncharacterized protein. (350 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	calm1	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EN80	Arrb2.L	A0A1L8EN80	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EN80	Gnat	A0A1L8EN80	A0A1L8GP75	Uncharacterized protein.	Uncharacterized protein.	0.587
A0A1L8EN80	Opsin	A0A1L8EN80	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EN80	Rho.L	A0A1L8EN80	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.934
A0A1L8EN80	calm1	A0A1L8EN80	A0A1L8G5X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.502
A0A1L8EN80	calml4	A0A1L8EN80	A0A1L8GSE0	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8EN80	calml4-2	A0A1L8EN80	A0A1L8H184	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EUU9	Arrb2.L	A0A1L8EUU9	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EUU9	Gnat	A0A1L8EUU9	A0A1L8GP75	Uncharacterized protein.	Uncharacterized protein.	0.587
A0A1L8EUU9	Opsin	A0A1L8EUU9	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EUU9	Rho.L	A0A1L8EUU9	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.933
A0A1L8EUU9	calm1	A0A1L8EUU9	A0A1L8G5X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.503
A0A1L8EUU9	calml4	A0A1L8EUU9	A0A1L8GSE0	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8EUU9	calml4-2	A0A1L8EUU9	A0A1L8H184	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	Rhodopsin.	Uncharacterized protein.	0.956
A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	Rhodopsin.	Uncharacterized protein.	0.956
A0A1L8GHL0	Arrb2.L	A0A1L8GHL0	A0A1L8H368	Rhodopsin.	Arrestin_C domain-containing protein.	0.991
A0A1L8GHL0	Gnat	A0A1L8GHL0	A0A1L8GP75	Rhodopsin.	Uncharacterized protein.	0.977