20 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Tln2.S	Uncharacterized protein. (2612 aa)
	src	Tyrosine-protein kinase. (532 aa)
	nr3c1-2	XGR protein. (776 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	A0A1L8GTE5	Uncharacterized protein. (2543 aa)
	Notch1.S	Uncharacterized protein. (2524 aa)
	lgals4.2	Galectin. (319 aa)
	notch1	Uncharacterized protein. (2521 aa)
	Lgals4.L	Galectin. (319 aa)
	Shh.L	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (444 aa)
	nr3c1	Uncharacterized protein. (761 aa)
	A0A1L8H034	Uncharacterized protein. (2543 aa)
	Lims1.L	LIM domain-containing protein. (397 aa)
	A0A1L8HBL4	ANK_REP_REGION domain-containing protein. (263 aa)
	Git1	Uncharacterized protein. (737 aa)
	Lims1.S	LIM domain-containing protein. (340 aa)
	Egf.L	Uncharacterized protein. (1031 aa)
	A0A1L8I385	Uncharacterized protein. (2303 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GTE5	A0A1L8HBL4	A0A1L8GTE5	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.782
A0A1L8GTE5	Lims1.L	A0A1L8GTE5	A0A1L8H8L3	Uncharacterized protein.	LIM domain-containing protein.	0.614
A0A1L8GTE5	Lims1.S	A0A1L8GTE5	A0A1L8HGL0	Uncharacterized protein.	LIM domain-containing protein.	0.614
A0A1L8GTE5	actl6a	A0A1L8GTE5	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.959
A0A1L8GTE5	src	A0A1L8GTE5	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.808
A0A1L8H034	A0A1L8HBL4	A0A1L8H034	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.780
A0A1L8H034	Lims1.L	A0A1L8H034	A0A1L8H8L3	Uncharacterized protein.	LIM domain-containing protein.	0.614
A0A1L8H034	Lims1.S	A0A1L8H034	A0A1L8HGL0	Uncharacterized protein.	LIM domain-containing protein.	0.614
A0A1L8H034	actl6a	A0A1L8H034	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.968
A0A1L8H034	src	A0A1L8H034	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.808
A0A1L8HBL4	A0A1L8GTE5	A0A1L8HBL4	A0A1L8GTE5	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.782
A0A1L8HBL4	A0A1L8H034	A0A1L8HBL4	A0A1L8H034	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.780
A0A1L8HBL4	A0A1L8I385	A0A1L8HBL4	A0A1L8I385	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.768
A0A1L8HBL4	Lims1.L	A0A1L8HBL4	A0A1L8H8L3	ANK_REP_REGION domain-containing protein.	LIM domain-containing protein.	0.993
A0A1L8HBL4	Lims1.S	A0A1L8HBL4	A0A1L8HGL0	ANK_REP_REGION domain-containing protein.	LIM domain-containing protein.	0.993
A0A1L8HBL4	Tln2.S	A0A1L8HBL4	A0A310UCZ7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.769
A0A1L8HBL4	actl6a	A0A1L8HBL4	Q7ZYI5	ANK_REP_REGION domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.627
A0A1L8HBL4	src	A0A1L8HBL4	Q2TAR1	ANK_REP_REGION domain-containing protein.	Tyrosine-protein kinase.	0.527
A0A1L8I385	A0A1L8HBL4	A0A1L8I385	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.768
A0A1L8I385	Lims1.L	A0A1L8I385	A0A1L8H8L3	Uncharacterized protein.	LIM domain-containing protein.	0.614