12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	vangl2	Vang-like protein. (521 aa)
	vangl2-2	Vang-like protein. (521 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (590 aa)
	ankrd6	ANK_REP_REGION domain-containing protein. (776 aa)
	ankrd6-2	ANK_REP_REGION domain-containing protein. (776 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	Hdac3.S	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (405 aa)
	nodal1	TGF_BETA_2 domain-containing protein. (406 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100189571	actl6a	B7ZRX0	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.883
Prkci.L	actl6a	A0A1L8GAK2	Q7ZYI5	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Baf53a-pending-prov protein; Belongs to the actin family.	0.768
Prkci.L	pard6b	A0A1L8GAK2	A0A1L8ELH2	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
Prkci.L	pard6b-2	A0A1L8GAK2	A0A1L8ESP6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
Prkci.L	vangl2	A0A1L8GAK2	A0A1L8F4R0	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Vang-like protein.	0.853
Prkci.L	vangl2-2	A0A1L8GAK2	A0A1L8FCL1	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Vang-like protein.	0.853
actl6a	LOC100189571	Q7ZYI5	B7ZRX0	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.883
actl6a	Prkci.L	Q7ZYI5	A0A1L8GAK2	Baf53a-pending-prov protein; Belongs to the actin family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.768
actl6a	pard6b	Q7ZYI5	A0A1L8ELH2	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.621
actl6a	pard6b-2	Q7ZYI5	A0A1L8ESP6	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.621
actl6a	prkcz	Q7ZYI5	A0A1L8FM28	Baf53a-pending-prov protein; Belongs to the actin family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.532
actl6a	vangl2	Q7ZYI5	A0A1L8F4R0	Baf53a-pending-prov protein; Belongs to the actin family.	Vang-like protein.	0.680
actl6a	vangl2-2	Q7ZYI5	A0A1L8FCL1	Baf53a-pending-prov protein; Belongs to the actin family.	Vang-like protein.	0.680
ankrd6	vangl2	A0A1L8G2Z6	A0A1L8F4R0	ANK_REP_REGION domain-containing protein.	Vang-like protein.	0.809
ankrd6	vangl2-2	A0A1L8G2Z6	A0A1L8FCL1	ANK_REP_REGION domain-containing protein.	Vang-like protein.	0.809
ankrd6-2	vangl2	A0A1L8G9L0	A0A1L8F4R0	ANK_REP_REGION domain-containing protein.	Vang-like protein.	0.809
ankrd6-2	vangl2-2	A0A1L8G9L0	A0A1L8FCL1	ANK_REP_REGION domain-containing protein.	Vang-like protein.	0.809
pard6b	Prkci.L	A0A1L8ELH2	A0A1L8GAK2	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.999
pard6b	actl6a	A0A1L8ELH2	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.621
pard6b	prkcz	A0A1L8ELH2	A0A1L8FM28	Uncharacterized protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.995