19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Tcf3.L	BHLH domain-containing protein. (709 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	efnb1	Ephrin-B1 (EPH family ligand); Belongs to the ephrin family. (329 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	glb1	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family. (642 aa)
	daam1	Uncharacterized protein. (1077 aa)
	cgn	Myosin_tail_1 domain-containing protein. (1368 aa)
	fmn1	FH2 domain-containing protein. (1393 aa)
	cgn-2	Myosin_tail_1 domain-containing protein. (1368 aa)
	Glb1l2.S	Beta-galactosidase. (616 aa)
	glb1l2	Beta-galactosidase. (634 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (590 aa)
	dvl1	Uncharacterized protein. (606 aa)
	wnt3a	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	Glb1l.L	Beta-galactosidase. (645 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdh3.S	Prkci.L	A0A1L8GET9	A0A1L8GAK2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.694
Cdh3.S	Tjp1.S	A0A1L8GET9	A0A1L8H090	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	cgn	A0A1L8GET9	A0A1L8F572	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Myosin_tail_1 domain-containing protein.	0.485
Cdh3.S	cgn-2	A0A1L8GET9	A0A1L8FDB5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Myosin_tail_1 domain-containing protein.	0.485
Cdh3.S	ctnnb1	A0A1L8GET9	Q63ZT4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Beta-catenin protein.	0.999
Cdh3.S	efnb1	A0A1L8GET9	B7ZQX6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Ephrin-B1 (EPH family ligand); Belongs to the ephrin family.	0.483
Cdh3.S	fmn1	A0A1L8GET9	A0A1L8FAR9	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	FH2 domain-containing protein.	0.559
Cdh3.S	prkcz	A0A1L8GET9	A0A1L8FM28	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.406
Cdh3.S	wnt3a	A0A1L8GET9	A0A1L8FUX8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.625
Glb1l.L	glb1	A0A1L8FWQ8	A0A1L8EVM8	Beta-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family.	0.902
Prkci.L	Cdh3.S	A0A1L8GAK2	A0A1L8GET9	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.694
Prkci.L	Tjp1.S	A0A1L8GAK2	A0A1L8H090	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Belongs to the MAGUK family.	0.841
Prkci.L	cdh1	A0A1L8GAK2	A0A1L8GKV4	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.730
Prkci.L	cdh3	A0A1L8GAK2	A0A1L8GKW6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.753
Prkci.L	cgn	A0A1L8GAK2	A0A1L8F572	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Myosin_tail_1 domain-containing protein.	0.586
Prkci.L	cgn-2	A0A1L8GAK2	A0A1L8FDB5	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Myosin_tail_1 domain-containing protein.	0.586
Prkci.L	ctnnb1	A0A1L8GAK2	Q63ZT4	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Beta-catenin protein.	0.627
Prkci.L	efnb1	A0A1L8GAK2	B7ZQX6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Ephrin-B1 (EPH family ligand); Belongs to the ephrin family.	0.522