14 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	frmd6	FERM domain-containing protein. (607 aa)
	tia1-2	MGC84540 protein. (389 aa)
	col2a1	Uncharacterized protein. (1486 aa)
	Nr1h5.S	Uncharacterized protein. (530 aa)
	vwf	Uncharacterized protein. (2841 aa)
	frmd6-2	FERM domain-containing protein. (610 aa)
	Tia-1	Uncharacterized protein. (434 aa)
	A0A1L8GA54	Uncharacterized protein. (882 aa)
	A0A1L8GA23	Chordin; Belongs to the chordin family. (940 aa)
	Chrd.1.S	Chordin; Belongs to the chordin family. (941 aa)
	tia1	Uncharacterized protein. (449 aa)
	adamts2	Uncharacterized protein. (1173 aa)
	tgfb1-2	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GA23	A0A1L8GA54	A0A1L8GA23	A0A1L8GA54	Chordin; Belongs to the chordin family.	Uncharacterized protein.	0.900
A0A1L8GA23	Chrd.1.S	A0A1L8GA23	A0A1L8G404	Chordin; Belongs to the chordin family.	Chordin; Belongs to the chordin family.	0.900
A0A1L8GA23	vwf	A0A1L8GA23	A0A1L8GWR2	Chordin; Belongs to the chordin family.	Uncharacterized protein.	0.549
A0A1L8GA54	A0A1L8GA23	A0A1L8GA54	A0A1L8GA23	Uncharacterized protein.	Chordin; Belongs to the chordin family.	0.900
A0A1L8GA54	Chrd.1.S	A0A1L8GA54	A0A1L8G404	Uncharacterized protein.	Chordin; Belongs to the chordin family.	0.900
A0A1L8GA54	vwf	A0A1L8GA54	A0A1L8GWR2	Uncharacterized protein.	Uncharacterized protein.	0.549
Chrd.1.S	A0A1L8GA23	A0A1L8G404	A0A1L8GA23	Chordin; Belongs to the chordin family.	Chordin; Belongs to the chordin family.	0.900
Chrd.1.S	A0A1L8GA54	A0A1L8G404	A0A1L8GA54	Chordin; Belongs to the chordin family.	Uncharacterized protein.	0.900
Chrd.1.S	vwf	A0A1L8G404	A0A1L8GWR2	Chordin; Belongs to the chordin family.	Uncharacterized protein.	0.459
adamts2	vwf	A0A1L8GVK2	A0A1L8GWR2	Uncharacterized protein.	Uncharacterized protein.	0.500
tgfb1	tgfb1-2	A0A1L8F3Y7	A0A1L8F936	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
tgfb1-2	tgfb1	A0A1L8F936	A0A1L8F3Y7	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
vwf	A0A1L8GA23	A0A1L8GWR2	A0A1L8GA23	Uncharacterized protein.	Chordin; Belongs to the chordin family.	0.549
vwf	A0A1L8GA54	A0A1L8GWR2	A0A1L8GA54	Uncharacterized protein.	Uncharacterized protein.	0.549
vwf	Chrd.1.S	A0A1L8GWR2	A0A1L8G404	Uncharacterized protein.	Chordin; Belongs to the chordin family.	0.459
vwf	adamts2	A0A1L8GWR2	A0A1L8GVK2	Uncharacterized protein.	Uncharacterized protein.	0.500