6 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ift27.S	Uncharacterized protein. (178 aa)
	ift27	Uncharacterized protein. (186 aa)
	arl5b	LOC496255 protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	srprb	Uncharacterized protein. (265 aa)
	Arl16.L	Uncharacterized protein. (172 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arl16.L	Ift27.S	A0A1L8ETJ9	A0A1L8GH73	Uncharacterized protein.	Uncharacterized protein.	0.956
Arl16.L	ift27	A0A1L8ETJ9	A0A1L8GP42	Uncharacterized protein.	Uncharacterized protein.	0.479
Arl16.L	srprb	A0A1L8ETJ9	A0A1L8G4Y8	Uncharacterized protein.	Uncharacterized protein.	0.886
Ift27.S	Arl16.L	A0A1L8GH73	A0A1L8ETJ9	Uncharacterized protein.	Uncharacterized protein.	0.956
Ift27.S	arl5b	A0A1L8GH73	Q5M783	Uncharacterized protein.	LOC496255 protein; Belongs to the small GTPase superfamily. Arf family.	0.775
Ift27.S	srprb	A0A1L8GH73	A0A1L8G4Y8	Uncharacterized protein.	Uncharacterized protein.	0.919
arl5b	Ift27.S	Q5M783	A0A1L8GH73	LOC496255 protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.775
ift27	Arl16.L	A0A1L8GP42	A0A1L8ETJ9	Uncharacterized protein.	Uncharacterized protein.	0.479
srprb	Arl16.L	A0A1L8G4Y8	A0A1L8ETJ9	Uncharacterized protein.	Uncharacterized protein.	0.886
srprb	Ift27.S	A0A1L8G4Y8	A0A1L8GH73	Uncharacterized protein.	Uncharacterized protein.	0.919