23 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8F270	FERM domain-containing protein. (580 aa)
	Actn1.L	Uncharacterized protein. (890 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (884 aa)
	Itgb1.L	Integrin beta; Belongs to the integrin beta chain family. (801 aa)
	plek	Uncharacterized protein. (350 aa)
	map2k1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (395 aa)
	grb2	Uncharacterized protein. (229 aa)
	A0A1L8GTE5	Uncharacterized protein. (2543 aa)
	eea1	FYVE-type domain-containing protein. (1400 aa)
	A0A1L8H034	Uncharacterized protein. (2543 aa)
	grb2-2	Uncharacterized protein. (229 aa)
	A0A1L8HJ91	FERM domain-containing protein. (557 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	A0A1L8I385	Uncharacterized protein. (2303 aa)
	Tln2.S	Uncharacterized protein. (2612 aa)
	src	Tyrosine-protein kinase. (532 aa)
	mmp14	Membrane type-1 matrix metalloproteinase 14. (575 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)
	rdx	FERM domain-containing protein. (602 aa)
	fgd1	Uncharacterized protein. (867 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F270	A0A1L8GTE5	A0A1L8F270	A0A1L8GTE5	FERM domain-containing protein.	Uncharacterized protein.	0.417
A0A1L8F270	A0A1L8H034	A0A1L8F270	A0A1L8H034	FERM domain-containing protein.	Uncharacterized protein.	0.417
A0A1L8F270	A0A1L8HJ91	A0A1L8F270	A0A1L8HJ91	FERM domain-containing protein.	FERM domain-containing protein.	0.957
A0A1L8F270	A0A1L8I385	A0A1L8F270	A0A1L8I385	FERM domain-containing protein.	Uncharacterized protein.	0.417
A0A1L8F270	Tln2.S	A0A1L8F270	A0A310UCZ7	FERM domain-containing protein.	Uncharacterized protein.	0.414
A0A1L8F270	actl6a	A0A1L8F270	Q7ZYI5	FERM domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.978
A0A1L8F270	grb2	A0A1L8F270	A0A1L8EMZ6	FERM domain-containing protein.	Uncharacterized protein.	0.437
A0A1L8F270	grb2-2	A0A1L8F270	A0A1L8EUF2	FERM domain-containing protein.	Uncharacterized protein.	0.438
A0A1L8F270	plek	A0A1L8F270	A0A1L8G6R7	FERM domain-containing protein.	Uncharacterized protein.	0.567
A0A1L8F270	pxn	A0A1L8F270	A0A1L8I058	FERM domain-containing protein.	Uncharacterized protein; Belongs to the paxillin family.	0.704
A0A1L8F270	pxn-2	A0A1L8F270	Q9I957	FERM domain-containing protein.	LOC397826 protein; Belongs to the paxillin family.	0.703
A0A1L8F270	rdx	A0A1L8F270	A0A1L8HAW1	FERM domain-containing protein.	FERM domain-containing protein.	0.957
A0A1L8F270	src	A0A1L8F270	Q2TAR1	FERM domain-containing protein.	Tyrosine-protein kinase.	0.525
A0A1L8GTE5	A0A1L8F270	A0A1L8GTE5	A0A1L8F270	Uncharacterized protein.	FERM domain-containing protein.	0.417
A0A1L8GTE5	A0A1L8HJ91	A0A1L8GTE5	A0A1L8HJ91	Uncharacterized protein.	FERM domain-containing protein.	0.470
A0A1L8GTE5	Actn1.L	A0A1L8GTE5	A0A1L8FAR4	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A1L8GTE5	Itgb1.L	A0A1L8GTE5	A0A1L8FVD9	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.973
A0A1L8GTE5	actl6a	A0A1L8GTE5	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.959
A0A1L8GTE5	grb2	A0A1L8GTE5	A0A1L8EMZ6	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A1L8GTE5	grb2-2	A0A1L8GTE5	A0A1L8EUF2	Uncharacterized protein.	Uncharacterized protein.	0.609