17 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdk1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (302 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	pxdn	Uncharacterized protein. (1461 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	pxdn-2	Uncharacterized protein. (1464 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	Tp53.L	P53 domain-containing protein. (137 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	Map4.L	Microtubule-associated protein. (1234 aa)
	map4	Microtubule-associated protein. (1211 aa)
	Cdk1.L	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdk1.L	Gapdh.S	A0A1L8FIT4	Q7ZY52	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Glyceraldehyde-3-phosphate dehydrogenase.	0.581
Cdk1.L	Map4.L	A0A1L8FIT4	A0A1L8FUT9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.717
Cdk1.L	Stmn1.S	A0A1L8FIT4	A0A1L8H795	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.496
Cdk1.L	Tp53.L	A0A1L8FIT4	A0A1L8H4M6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	P53 domain-containing protein.	0.904
Cdk1.L	actl6a	A0A1L8FIT4	Q7ZYI5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Baf53a-pending-prov protein; Belongs to the actin family.	0.795
Cdk1.L	cdk1	A0A1L8FIT4	A0A1L8FE96	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.900
Cdk1.L	gapdh	A0A1L8FIT4	Q8AY70	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Glyceraldehyde-3-phosphate dehydrogenase.	0.582
Cdk1.L	map4	A0A1L8FIT4	A0A1L8FQC1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Microtubule-associated protein.	0.684
Cdk1.L	pxdn	A0A1L8FIT4	A0A1L8G530	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.568
Cdk1.L	pxdn-2	A0A1L8FIT4	A0A1L8GBD8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.568
Cdk1.L	stmn1	A0A1L8FIT4	A0A1L8HEF1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Stathmin; Belongs to the stathmin family.	0.583
Cdk1.L	stmn2-2	A0A1L8FIT4	Q6DJD4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Stathmin; Belongs to the stathmin family.	0.401
Cdk1.L	stmn3	A0A1L8FIT4	Q4KLA7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Stathmin; Belongs to the stathmin family.	0.427
Cdk1.L	stmn3-2	A0A1L8FIT4	Q8AVQ7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Stathmin; Belongs to the stathmin family.	0.427
Cdk1.L	stmn4	A0A1L8FIT4	A0A1L8G5Z4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Stathmin; Belongs to the stathmin family.	0.408
Gapdh.S	Cdk1.L	Q7ZY52	A0A1L8FIT4	Glyceraldehyde-3-phosphate dehydrogenase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.581
Gapdh.S	Tp53.L	Q7ZY52	A0A1L8H4M6	Glyceraldehyde-3-phosphate dehydrogenase.	P53 domain-containing protein.	0.828
Gapdh.S	actl6a	Q7ZY52	Q7ZYI5	Glyceraldehyde-3-phosphate dehydrogenase.	Baf53a-pending-prov protein; Belongs to the actin family.	0.951
Gapdh.S	cdk1	Q7ZY52	A0A1L8FE96	Glyceraldehyde-3-phosphate dehydrogenase.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.581
Gapdh.S	gapdh	Q7ZY52	Q8AY70	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900