15 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	rab5c	Uncharacterized protein. (215 aa)
	A0A1L8EYQ3	LLGL domain-containing protein. (1049 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (590 aa)
	Rab5a.L	Uncharacterized protein. (216 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (947 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	foxi1	Fork-head domain-containing protein. (373 aa)
	foxi1-2	Fork-head domain-containing protein. (373 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	Cetn4.L	Uncharacterized protein. (344 aa)
	rabif	MGC115104 protein. (118 aa)
	Xcen	Xcen protein. (172 aa)
	cetn1	Cetn2-prov protein. (172 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EYQ3	Cdh3.S	A0A1L8EYQ3	A0A1L8GET9	LLGL domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.479
A0A1L8EYQ3	cdh1	A0A1L8EYQ3	A0A1L8GKV4	LLGL domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.428
A0A1L8EYQ3	cdh3	A0A1L8EYQ3	A0A1L8GKW6	LLGL domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.473
A0A1L8EYQ3	prkcz	A0A1L8EYQ3	A0A1L8FM28	LLGL domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.976
Cdh3.S	A0A1L8EYQ3	A0A1L8GET9	A0A1L8EYQ3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	LLGL domain-containing protein.	0.479
Cdh3.S	Rab5a.L	A0A1L8GET9	A0A1L8FRH6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.440
Cdh3.S	Tjp1.S	A0A1L8GET9	A0A1L8H090	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	prkcz	A0A1L8GET9	A0A1L8FM28	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.406
Cdh3.S	rab5c	A0A1L8GET9	A0A1L8ERL9	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.422
Rab5a.L	Cdh3.S	A0A1L8FRH6	A0A1L8GET9	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.440
Rab5a.L	cdh3	A0A1L8FRH6	A0A1L8GKW6	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.479
Rab5a.L	rabif	A0A1L8FRH6	Q569S2	Uncharacterized protein.	MGC115104 protein.	0.650
Tjp1.S	Cdh3.S	A0A1L8H090	A0A1L8GET9	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.949
Tjp1.S	Xcen	A0A1L8H090	Q5XHJ4	Uncharacterized protein; Belongs to the MAGUK family.	Xcen protein.	0.473
Tjp1.S	cdh1	A0A1L8H090	A0A1L8GKV4	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.949
Tjp1.S	cdh2	A0A1L8H090	A0A1L8FSZ9	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.919
Tjp1.S	cdh3	A0A1L8H090	A0A1L8GKW6	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.949
Tjp1.S	prkcz	A0A1L8H090	A0A1L8FM28	Uncharacterized protein; Belongs to the MAGUK family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.528