17 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rcvrn.2	MGC84117 protein. (192 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	grk7	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (550 aa)
	calm1	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	grk7-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (551 aa)
	Pdc.S	Phosducin domain-containing protein. (259 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	Pdc.L	Phosducin domain-containing protein. (246 aa)
	Rho.L	Rhodopsin. (459 aa)
	Opsin	Rhodopsin. (403 aa)
	calml4	Uncharacterized protein. (153 aa)
	calml4-2	Uncharacterized protein. (152 aa)
	Arrb2.L	Arrestin_C domain-containing protein. (446 aa)
	grk1	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	grk1-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EN80	Arrb2.L	A0A1L8EN80	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EN80	Opsin	A0A1L8EN80	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EN80	Pdc.L	A0A1L8EN80	A0A1L8GNP4	Uncharacterized protein.	Phosducin domain-containing protein.	0.635
A0A1L8EN80	Pdc.S	A0A1L8EN80	A0A1L8GGX9	Uncharacterized protein.	Phosducin domain-containing protein.	0.635
A0A1L8EN80	Rho.L	A0A1L8EN80	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.934
A0A1L8EN80	calm1	A0A1L8EN80	A0A1L8G5X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.502
A0A1L8EN80	calml4	A0A1L8EN80	A0A1L8GSE0	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8EN80	calml4-2	A0A1L8EN80	A0A1L8H184	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A1L8EN80	grk1	A0A1L8EN80	A0A1L8H8W4	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk1-2	A0A1L8EN80	A0A1L8HGX8	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk7	A0A1L8EN80	A0A1L8G4T3	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EN80	grk7-2	A0A1L8EN80	A0A1L8GB62	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EUU9	Arrb2.L	A0A1L8EUU9	A0A1L8H368	Uncharacterized protein.	Arrestin_C domain-containing protein.	0.844
A0A1L8EUU9	Opsin	A0A1L8EUU9	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EUU9	Pdc.L	A0A1L8EUU9	A0A1L8GNP4	Uncharacterized protein.	Phosducin domain-containing protein.	0.636
A0A1L8EUU9	Pdc.S	A0A1L8EUU9	A0A1L8GGX9	Uncharacterized protein.	Phosducin domain-containing protein.	0.636
A0A1L8EUU9	Rho.L	A0A1L8EUU9	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.933
A0A1L8EUU9	calm1	A0A1L8EUU9	A0A1L8G5X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.503