42 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sema3a	Uncharacterized protein; Belongs to the semaphorin family. (771 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	Runx1.L	Runt-related transcription factor. (462 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	en2-2	Homeobox protein engrailed-like. (265 aa)
	bmp4	Bone morphogenetic protein 4. (401 aa)
	nf-at	Nuclear factor of activated T-cell. (884 aa)
	tbx3-A	Transcription repression factor Tbx3. (716 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	runx1t1	MTG8. (582 aa)
	bdnf-2	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (247 aa)
	atf3-2	MGC81814 protein. (181 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	cebpd	CCAAT/enhancer-binding protein. (281 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	creb1	Creb1-prov protein. (324 aa)
	thibz	Leucine zipper. (331 aa)
	bmp4-2	Bone morphogenetic protein 4. (400 aa)
	tcea1	TFIIS elongation factor. (303 aa)
	tbx3	Transcription factor Tbx3. (711 aa)
	c-Jun	C-Jun protein; Belongs to the bZIP family. (312 aa)
	Nfatc2.S	RHD domain-containing protein. (884 aa)
	crebbp	Uncharacterized protein. (2424 aa)
	stat3.1	Signal transducer and activator of transcription. (769 aa)
	nfatc2	RHD domain-containing protein. (896 aa)
	crebbp-2	Uncharacterized protein. (2453 aa)
	otx2	Homeobox domain-containing protein. (288 aa)
	otx2-2	Homeobox domain-containing protein. (289 aa)
	Ube4a.S	U-box domain-containing protein. (1091 aa)
	nmnat1	Nicotinamide-nucleotide adenylyltransferase. (319 aa)
	ube4a	U-box domain-containing protein. (1074 aa)
	hoxa5	Homeobox domain-containing protein. (272 aa)
	Cebpd.S	CCAAT/enhancer-binding protein. (283 aa)
	en2	Homeobox protein engrailed-like. (265 aa)
	hoxa5-2	Homeobox domain-containing protein. (273 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	atf3	BZIP domain-containing protein. (182 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	bdnf	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (247 aa)
	nfatc3	RHD domain-containing protein. (885 aa)
	Jun.L	BZIP domain-containing protein; Belongs to the bZIP family. (314 aa)
	sema3a-2	Uncharacterized protein; Belongs to the semaphorin family. (774 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cebpd.S	Jun.L	A0A1L8FT13	A0A1L8GLZ4	CCAAT/enhancer-binding protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.484
Cebpd.S	atf3	A0A1L8FT13	A0A1L8G1E5	CCAAT/enhancer-binding protein.	BZIP domain-containing protein.	0.403
Cebpd.S	atf3-2	A0A1L8FT13	Q68F43	CCAAT/enhancer-binding protein.	MGC81814 protein.	0.403
Cebpd.S	c-Jun	A0A1L8FT13	Q9PVZ1	CCAAT/enhancer-binding protein.	C-Jun protein; Belongs to the bZIP family.	0.484
Cebpd.S	creb1	A0A1L8FT13	Q8AVY5	CCAAT/enhancer-binding protein.	Creb1-prov protein.	0.532
Cebpd.S	thibz	A0A1L8FT13	Q91640	CCAAT/enhancer-binding protein.	Leucine zipper.	0.454
Jun.L	Cebpd.S	A0A1L8GLZ4	A0A1L8FT13	BZIP domain-containing protein; Belongs to the bZIP family.	CCAAT/enhancer-binding protein.	0.484
Jun.L	Nfatc2.S	A0A1L8GLZ4	A0A1L8ELF6	BZIP domain-containing protein; Belongs to the bZIP family.	RHD domain-containing protein.	0.969
Jun.L	Runx1.L	A0A1L8GLZ4	A0A1L8HCI8	BZIP domain-containing protein; Belongs to the bZIP family.	Runt-related transcription factor.	0.444
Jun.L	atf3	A0A1L8GLZ4	A0A1L8G1E5	BZIP domain-containing protein; Belongs to the bZIP family.	BZIP domain-containing protein.	0.973
Jun.L	atf3-2	A0A1L8GLZ4	Q68F43	BZIP domain-containing protein; Belongs to the bZIP family.	MGC81814 protein.	0.973
Jun.L	bdnf	A0A1L8GLZ4	A0A1L8GDT3	BZIP domain-containing protein; Belongs to the bZIP family.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.579
Jun.L	bdnf-2	A0A1L8GLZ4	Q63ZM5	BZIP domain-containing protein; Belongs to the bZIP family.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.579
Jun.L	bmp4	A0A1L8GLZ4	B7ZPR8	BZIP domain-containing protein; Belongs to the bZIP family.	Bone morphogenetic protein 4.	0.463
Jun.L	bmp4-2	A0A1L8GLZ4	Q91703	BZIP domain-containing protein; Belongs to the bZIP family.	Bone morphogenetic protein 4.	0.505
Jun.L	c-Jun	A0A1L8GLZ4	Q9PVZ1	BZIP domain-containing protein; Belongs to the bZIP family.	C-Jun protein; Belongs to the bZIP family.	0.958
Jun.L	cebpd	A0A1L8GLZ4	Q76E40	BZIP domain-containing protein; Belongs to the bZIP family.	CCAAT/enhancer-binding protein.	0.484
Jun.L	creb1	A0A1L8GLZ4	Q8AVY5	BZIP domain-containing protein; Belongs to the bZIP family.	Creb1-prov protein.	0.897
Jun.L	crebbp	A0A1L8GLZ4	A0A1L8EQR2	BZIP domain-containing protein; Belongs to the bZIP family.	Uncharacterized protein.	0.873
Jun.L	crebbp-2	A0A1L8GLZ4	A0A1L8EYE5	BZIP domain-containing protein; Belongs to the bZIP family.	Uncharacterized protein.	0.873