12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rd3-2	Uncharacterized protein. (197 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	rd3	Uncharacterized protein. (197 aa)
	grk7	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (550 aa)
	pxdn	Uncharacterized protein. (1461 aa)
	grk7-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (551 aa)
	pxdn-2	Uncharacterized protein. (1464 aa)
	grk1	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	grk1-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	rcvrn.2	MGC84117 protein. (192 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	grk1	A0A1L8EN80	A0A1L8H8W4	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk1-2	A0A1L8EN80	A0A1L8HGX8	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk7	A0A1L8EN80	A0A1L8G4T3	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EN80	grk7-2	A0A1L8EN80	A0A1L8GB62	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EUU9	grk1	A0A1L8EUU9	A0A1L8H8W4	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.992
A0A1L8EUU9	grk1-2	A0A1L8EUU9	A0A1L8HGX8	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.992
A0A1L8EUU9	grk7	A0A1L8EUU9	A0A1L8G4T3	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EUU9	grk7-2	A0A1L8EUU9	A0A1L8GB62	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
grk1	A0A1L8EN80	A0A1L8H8W4	A0A1L8EN80	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.990
grk1	A0A1L8EUU9	A0A1L8H8W4	A0A1L8EUU9	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.992
grk1	rcvrn.2	A0A1L8H8W4	Q68EX5	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	MGC84117 protein.	0.990
grk1	rcvrn.2-2	A0A1L8H8W4	Q6DJE7	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	MGC84424 protein.	0.990
grk1	rd3	A0A1L8H8W4	A0A1L8G1D0	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.527
grk1	rd3-2	A0A1L8H8W4	A0A1L8G697	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.527
grk1-2	A0A1L8EN80	A0A1L8HGX8	A0A1L8EN80	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.990
grk1-2	A0A1L8EUU9	A0A1L8HGX8	A0A1L8EUU9	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.992
grk1-2	rcvrn.2	A0A1L8HGX8	Q68EX5	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	MGC84117 protein.	0.990
grk1-2	rcvrn.2-2	A0A1L8HGX8	Q6DJE7	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	MGC84424 protein.	0.990
grk1-2	rd3	A0A1L8HGX8	A0A1L8G1D0	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.527
grk1-2	rd3-2	A0A1L8HGX8	A0A1L8G697	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Uncharacterized protein.	0.527