19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	Sod2.S	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (226 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	A0A1L8G820	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (224 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	cbr1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
	A0A1L8HCI6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
	cbr1-2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	anxa1.2	Annexin. (338 aa)
	A0A1L8HY95	Annexin. (338 aa)
	cbr1-3	MGC131152 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	cbr1-4	LOC496039 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)
	anxa1.3	Annexin. (363 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	anxa1.1	Annexin. (343 aa)
	anxa1.1-2	Annexin. (343 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8G820	Sod2.S	A0A1L8G820	A0A1L8G1V6	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.900
A0A1L8HCI6	A0A1L8HY95	A0A1L8HCI6	A0A1L8HY95	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Annexin.	0.489
A0A1L8HCI6	Stmn1.S	A0A1L8HCI6	A0A1L8H795	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.403
A0A1L8HCI6	stmn1	A0A1L8HCI6	A0A1L8HEF1	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.403
A0A1L8HCI6	stmn2	A0A1L8HCI6	A0A1L8FZA7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.401
A0A1L8HCI6	stmn2-2	A0A1L8HCI6	Q6DJD4	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.401
A0A1L8HCI6	stmn3	A0A1L8HCI6	Q4KLA7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.406
A0A1L8HCI6	stmn3-2	A0A1L8HCI6	Q8AVQ7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.406
A0A1L8HCI6	stmn4	A0A1L8HCI6	A0A1L8G5Z4	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Stathmin; Belongs to the stathmin family.	0.406
A0A1L8HY95	A0A1L8HCI6	A0A1L8HY95	A0A1L8HCI6	Annexin.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.489
Sod2.S	A0A1L8G820	A0A1L8G1V6	A0A1L8G820	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.900
Stmn1.S	A0A1L8HCI6	A0A1L8H795	A0A1L8HCI6	Uncharacterized protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.403
Stmn1.S	stmn1	A0A1L8H795	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.900
stmn1	A0A1L8HCI6	A0A1L8HEF1	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.403
stmn1	Stmn1.S	A0A1L8HEF1	A0A1L8H795	Stathmin; Belongs to the stathmin family.	Uncharacterized protein.	0.900
stmn2	A0A1L8HCI6	A0A1L8FZA7	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.401
stmn2-2	A0A1L8HCI6	Q6DJD4	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.401
stmn3	A0A1L8HCI6	Q4KLA7	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.406
stmn3-2	A0A1L8HCI6	Q8AVQ7	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.406
stmn4	A0A1L8HCI6	A0A1L8G5Z4	A0A1L8HCI6	Stathmin; Belongs to the stathmin family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.406