20 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	limk1	Uncharacterized protein. (573 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	Limk1.L	Uncharacterized protein. (615 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	iqgap1	XIQGAP1 protein. (1657 aa)
	cdh11-2	Cadherin; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	rac1	MGC114731 protein. (192 aa)
	pak5	Non-specific serine/threonine protein kinase. (650 aa)
	Xcen	Xcen protein. (172 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	prkcz	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (590 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	wasl	Uncharacterized protein. (509 aa)
	Wasl.L	Uncharacterized protein. (509 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Limk1.L	Wasl.L	A0A1L8HDN6	A0A1L8GYZ1	Uncharacterized protein.	Uncharacterized protein.	0.418
Limk1.L	actl6a	A0A1L8HDN6	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.600
Limk1.L	pak5	A0A1L8HDN6	Q5PQ75	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.813
Limk1.L	rac1	A0A1L8HDN6	Q58E25	Uncharacterized protein.	MGC114731 protein.	0.653
Limk1.L	stmn2-2	A0A1L8HDN6	Q6DJD4	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.404
Limk1.L	wasl	A0A1L8HDN6	A0A1L8GU24	Uncharacterized protein.	Uncharacterized protein.	0.418
Stmn1.S	actl6a	A0A1L8H795	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.522
Stmn1.S	pak5	A0A1L8H795	Q5PQ75	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.468
Stmn1.S	stmn1	A0A1L8H795	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.900
Tjp1.S	Wasl.L	A0A1L8H090	A0A1L8GYZ1	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.538
Tjp1.S	Xcen	A0A1L8H090	Q5XHJ4	Uncharacterized protein; Belongs to the MAGUK family.	Xcen protein.	0.473
Tjp1.S	actl6a	A0A1L8H090	Q7ZYI5	Uncharacterized protein; Belongs to the MAGUK family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.966
Tjp1.S	cdh11-2	A0A1L8H090	O93264	Uncharacterized protein; Belongs to the MAGUK family.	Cadherin; Cadherins are calcium-dependent cell adhesion proteins.	0.819
Tjp1.S	ctnnb1	A0A1L8H090	Q63ZT4	Uncharacterized protein; Belongs to the MAGUK family.	Beta-catenin protein.	0.966
Tjp1.S	prkcz	A0A1L8H090	A0A1L8FM28	Uncharacterized protein; Belongs to the MAGUK family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.528
Tjp1.S	rac1	A0A1L8H090	Q58E25	Uncharacterized protein; Belongs to the MAGUK family.	MGC114731 protein.	0.629
Tjp1.S	wasl	A0A1L8H090	A0A1L8GU24	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.538
Wasl.L	Limk1.L	A0A1L8GYZ1	A0A1L8HDN6	Uncharacterized protein.	Uncharacterized protein.	0.418
Wasl.L	Tjp1.S	A0A1L8GYZ1	A0A1L8H090	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.538
Wasl.L	actl6a	A0A1L8GYZ1	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.964