17 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Clip1.S	Uncharacterized protein. (2319 aa)
	Map2.S	Microtubule-associated protein. (1811 aa)
	Map2.L	Microtubule-associated protein. (1769 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	ckap5	Uncharacterized protein. (2065 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	rhou	Rac-2 protein. (243 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	rac1	MGC114731 protein. (192 aa)
	iqgap1	XIQGAP1 protein. (1657 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	clip1	Uncharacterized protein. (2362 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Clip1.S	Map2.S	A0A1L8HQN4	A0A1L8EPL9	Uncharacterized protein.	Microtubule-associated protein.	0.441
Clip1.S	Stmn1.S	A0A1L8HQN4	A0A1L8H795	Uncharacterized protein.	Uncharacterized protein.	0.428
Clip1.S	actl6a	A0A1L8HQN4	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.718
Clip1.S	ckap5	A0A1L8HQN4	A0A1L8GIT7	Uncharacterized protein.	Uncharacterized protein.	0.943
Clip1.S	clip1	A0A1L8HQN4	A0A1L8I128	Uncharacterized protein.	Uncharacterized protein.	0.900
Clip1.S	iqgap1	A0A1L8HQN4	B7ZRI7	Uncharacterized protein.	XIQGAP1 protein.	0.922
Clip1.S	rac1	A0A1L8HQN4	Q58E25	Uncharacterized protein.	MGC114731 protein.	0.543
Clip1.S	stmn1	A0A1L8HQN4	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.485
Map2.L	actl6a	A0A1L8EWQ3	Q7ZYI5	Microtubule-associated protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.474
Map2.L	ckap5	A0A1L8EWQ3	A0A1L8GIT7	Microtubule-associated protein.	Uncharacterized protein.	0.756
Map2.L	stmn2-2	A0A1L8EWQ3	Q6DJD4	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.413
Map2.S	Clip1.S	A0A1L8EPL9	A0A1L8HQN4	Microtubule-associated protein.	Uncharacterized protein.	0.441
Map2.S	actl6a	A0A1L8EPL9	Q7ZYI5	Microtubule-associated protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.586
Map2.S	ckap5	A0A1L8EPL9	A0A1L8GIT7	Microtubule-associated protein.	Uncharacterized protein.	0.763
Map2.S	clip1	A0A1L8EPL9	A0A1L8I128	Microtubule-associated protein.	Uncharacterized protein.	0.441
Map2.S	stmn2-2	A0A1L8EPL9	Q6DJD4	Microtubule-associated protein.	Stathmin; Belongs to the stathmin family.	0.531
Stmn1.S	Clip1.S	A0A1L8H795	A0A1L8HQN4	Uncharacterized protein.	Uncharacterized protein.	0.428
Stmn1.S	actl6a	A0A1L8H795	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.522
Stmn1.S	ckap5	A0A1L8H795	A0A1L8GIT7	Uncharacterized protein.	Uncharacterized protein.	0.822
Stmn1.S	clip1	A0A1L8H795	A0A1L8I128	Uncharacterized protein.	Uncharacterized protein.	0.487