25 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup37	MGC83926 protein. (326 aa)
	nup54-2	Nup54. (535 aa)
	emd	Xemd1 protein. (180 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (916 aa)
	Nup205.L	Uncharacterized protein. (99 aa)
	nup54	Uncharacterized protein. (533 aa)
	Nup58.L	Uncharacterized protein. (599 aa)
	ranbp2	Uncharacterized protein. (2905 aa)
	Nup88.L	Uncharacterized protein. (727 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	Nup88.S	Uncharacterized protein. (726 aa)
	Nup93.L	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	Nup160.L	Uncharacterized protein. (1435 aa)
	Rangap1.S	RanGAP1_C domain-containing protein. (583 aa)
	Nup43.S	WD_REPEATS_REGION domain-containing protein. (375 aa)
	nup188	Uncharacterized protein. (1739 aa)
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	Nup85.L	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (882 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	Ranbp2.S	Uncharacterized protein. (2843 aa)
	nup62	Nuclear pore complex glycoprotein p62. (547 aa)
	sec13	Sec13l1-prov protein; Belongs to the WD repeat SEC13 family. (320 aa)
	rangap1	Rangap1-prov protein. (584 aa)
	nup155	Nup155-prov protein. (1388 aa)
	nutf2	Nutf2-prov protein. (127 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Nup160.L	Nup205.L	A0A1L8GIX3	A0A310U2L0	Uncharacterized protein.	Uncharacterized protein.	0.995
Nup160.L	Nup43.S	A0A1L8GIX3	A0A1L8G2B9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
Nup160.L	Nup58.L	A0A1L8GIX3	A0A1L8HJ31	Uncharacterized protein.	Uncharacterized protein.	0.959
Nup160.L	Nup85.L	A0A1L8GIX3	A0A1L8EUC8	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
Nup160.L	Nup88.L	A0A1L8GIX3	A0A1L8HGG3	Uncharacterized protein.	Uncharacterized protein.	0.993
Nup160.L	Nup88.S	A0A1L8GIX3	A0A1L8H8E3	Uncharacterized protein.	Uncharacterized protein.	0.966
Nup160.L	Nup93.L	A0A1L8GIX3	A0A1L8GKJ9	Uncharacterized protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.998
Nup160.L	Ranbp2.S	A0A1L8GIX3	A0A1L8H8R8	Uncharacterized protein.	Uncharacterized protein.	0.988
Nup160.L	Rangap1.S	A0A1L8GIX3	A0A1L8GH35	Uncharacterized protein.	RanGAP1_C domain-containing protein.	0.786
Nup160.L	Sumo1.L	A0A1L8GIX3	A0A1L8EWZ5	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.591
Nup160.L	Sumo1.S	A0A1L8GIX3	A0A1L8EPQ0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.591
Nup160.L	emd	A0A1L8GIX3	B7ZPV1	Uncharacterized protein.	Xemd1 protein.	0.424
Nup160.L	nup107	A0A1L8GIX3	A2RV69	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
Nup160.L	nup155	A0A1L8GIX3	Q7ZWL0	Uncharacterized protein.	Nup155-prov protein.	0.999
Nup160.L	nup188	A0A1L8GIX3	A0A1L8F1N1	Uncharacterized protein.	Uncharacterized protein.	0.994
Nup160.L	nup37	A0A1L8GIX3	Q66IZ6	Uncharacterized protein.	MGC83926 protein.	0.999
Nup160.L	nup54	A0A1L8GIX3	A0A1L8HVE6	Uncharacterized protein.	Uncharacterized protein.	0.981
Nup160.L	nup54-2	A0A1L8GIX3	K9ZTJ6	Uncharacterized protein.	Nup54.	0.981
Nup160.L	nup62	A0A1L8GIX3	Q91349	Uncharacterized protein.	Nuclear pore complex glycoprotein p62.	0.994
Nup160.L	nutf2	A0A1L8GIX3	Q7SZ24	Uncharacterized protein.	Nutf2-prov protein.	0.404