48 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ufl1	Uncharacterized protein. (795 aa)
	Ptprt.L	Uncharacterized protein. (1457 aa)
	Zeb2.S	Uncharacterized protein. (1246 aa)
	Glis2.S	Uncharacterized protein. (481 aa)
	glis2	Uncharacterized protein. (493 aa)
	A0A1L8EZU6	PID domain-containing protein. (642 aa)
	Zbtb33.S	Uncharacterized protein. (801 aa)
	arhgap35	Uncharacterized protein. (1476 aa)
	NumbL	PID domain-containing protein. (588 aa)
	muc1	SEA domain-containing protein. (692 aa)
	vav2	Uncharacterized protein. (832 aa)
	arhgap35-2	Uncharacterized protein. (1480 aa)
	A0A1L8F8U7	PID domain-containing protein. (588 aa)
	numbl	PID domain-containing protein. (651 aa)
	dyrk1a.2	Protein kinase domain-containing protein. (671 aa)
	egfr	Receptor protein-tyrosine kinase. (1208 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (947 aa)
	esrp1	Uncharacterized protein. (687 aa)
	egfr-2	Receptor protein-tyrosine kinase. (1210 aa)
	snai2	Uncharacterized protein. (266 aa)
	Esrp1.L	Uncharacterized protein. (688 aa)
	fyn	Tyrosine-protein kinase. (537 aa)
	Cttn.S	SH3 domain-containing protein. (503 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	cdh5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (774 aa)
	Cttn.L	SH3 domain-containing protein. (551 aa)
	Lrp5.L	Uncharacterized protein. (1517 aa)
	cdh5-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (775 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	hcls1	SH3 domain-containing protein. (553 aa)
	hcls1-2	SH3 domain-containing protein. (554 aa)
	arvcf	Uncharacterized protein. (919 aa)
	shroom3	Uncharacterized protein. (1788 aa)
	arvcf-2	Uncharacterized protein. (919 aa)
	fos	BZIP domain-containing protein. (369 aa)
	fyn-2	Tyrosine-protein kinase. (537 aa)
	cdh11-2	Cadherin; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)
	src	Tyrosine-protein kinase. (532 aa)
	rac1	MGC114731 protein. (192 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	fos-2	MGC80305 protein. (368 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	vav2-2	MGC68892 protein. (832 aa)
	rhoa	MGC64296 protein. (193 aa)
	snai2-2	Zinc finger transcription factor slug beta. (266 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)
	csnk1e	Casein kinase I epsilon; Belongs to the protein kinase superfamily. (416 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EZU6	arvcf-2	A0A1L8EZU6	A0A1L8I0M8	PID domain-containing protein.	Uncharacterized protein.	0.612
A0A1L8EZU6	cdh3	A0A1L8EZU6	A0A1L8GKW6	PID domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.426
A0A1L8EZU6	ctnnb1	A0A1L8EZU6	Q63ZT4	PID domain-containing protein.	Beta-catenin protein.	0.478
A0A1L8F8U7	arvcf-2	A0A1L8F8U7	A0A1L8I0M8	PID domain-containing protein.	Uncharacterized protein.	0.612
A0A1L8F8U7	cdh3	A0A1L8F8U7	A0A1L8GKW6	PID domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.426
A0A1L8F8U7	ctnnb1	A0A1L8F8U7	Q63ZT4	PID domain-containing protein.	Beta-catenin protein.	0.478
A0A1L8F8U7	egfr	A0A1L8F8U7	A0A1L8FRS8	PID domain-containing protein.	Receptor protein-tyrosine kinase.	0.400
A0A1L8F8U7	egfr-2	A0A1L8F8U7	A0A1L8FWP8	PID domain-containing protein.	Receptor protein-tyrosine kinase.	0.400
Cdh3.S	Lrp5.L	A0A1L8GET9	A0A1L8GJX4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.525
Cdh3.S	NumbL	A0A1L8GET9	A0A1L8F3U1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	PID domain-containing protein.	0.407
Cdh3.S	Zbtb33.S	A0A1L8GET9	A0A1L8F2M3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.580
Cdh3.S	Zeb2.S	A0A1L8GET9	A0A1L8ENX7	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.818
Cdh3.S	arvcf	A0A1L8GET9	A0A1L8HQG5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.737
Cdh3.S	arvcf-2	A0A1L8GET9	A0A1L8I0M8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.855
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh11-2	A0A1L8GET9	O93264	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin; Cadherins are calcium-dependent cell adhesion proteins.	0.536
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	cdh5	A0A1L8GET9	A0A1L8GEW5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.585
Cdh3.S	cdh5-2	A0A1L8GET9	A0A1L8GKR1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.583
Cdh3.S	ctnnb1	A0A1L8GET9	Q63ZT4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Beta-catenin protein.	0.999