16 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pcnt.L	PACT_coil_coil domain-containing protein. (4481 aa)
	crb2	Uncharacterized protein. (1472 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	tgfb1-2	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	Sox17a.S	Uncharacterized protein. (377 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (947 aa)
	sox17b.1	Uncharacterized protein. (373 aa)
	sox17b.1-2	Uncharacterized protein. (373 aa)
	tbxt	Uncharacterized protein. (432 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	bmp4	Bone morphogenetic protein 4. (401 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	tbxt-2	MGC81453 protein. (432 aa)
	bmp4-2	Bone morphogenetic protein 4. (400 aa)
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Prkci.L	cdh2	A0A1L8GAK2	A0A1L8FSZ9	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.507
Prkci.L	crb2	A0A1L8GAK2	A0A1L8F1Z8	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.485
Prkci.L	ctnnb1	A0A1L8GAK2	Q63ZT4	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Beta-catenin protein.	0.627
Prkci.L	pard6b	A0A1L8GAK2	A0A1L8ELH2	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
Prkci.L	pard6b-2	A0A1L8GAK2	A0A1L8ESP6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999
Prkci.L	tgfb1	A0A1L8GAK2	A0A1L8F3Y7	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.498
Prkci.L	tgfb1-2	A0A1L8GAK2	A0A1L8F936	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.498
Sox17a.S	bmp4	A0A1L8FT01	B7ZPR8	Uncharacterized protein.	Bone morphogenetic protein 4.	0.758
Sox17a.S	bmp4-2	A0A1L8FT01	Q91703	Uncharacterized protein.	Bone morphogenetic protein 4.	0.753
Sox17a.S	cdh2	A0A1L8FT01	A0A1L8FSZ9	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.420
Sox17a.S	ctnnb1	A0A1L8FT01	Q63ZT4	Uncharacterized protein.	Beta-catenin protein.	0.927
Sox17a.S	sox17b.1	A0A1L8FT01	A0A1L8FT40	Uncharacterized protein.	Uncharacterized protein.	0.906
Sox17a.S	sox17b.1-2	A0A1L8FT01	A0A1L8FZ03	Uncharacterized protein.	Uncharacterized protein.	0.904
Sox17a.S	tbxt	A0A1L8FT01	A0A1L8G2B1	Uncharacterized protein.	Uncharacterized protein.	0.889
Sox17a.S	tbxt-2	A0A1L8FT01	Q6INQ0	Uncharacterized protein.	MGC81453 protein.	0.889
bmp4	Sox17a.S	B7ZPR8	A0A1L8FT01	Bone morphogenetic protein 4.	Uncharacterized protein.	0.758
bmp4	bmp4-2	B7ZPR8	Q91703	Bone morphogenetic protein 4.	Bone morphogenetic protein 4.	0.900
bmp4	cdh2	B7ZPR8	A0A1L8FSZ9	Bone morphogenetic protein 4.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.534
bmp4	ctnnb1	B7ZPR8	Q63ZT4	Bone morphogenetic protein 4.	Beta-catenin protein.	0.889
bmp4	sox17b.1	B7ZPR8	A0A1L8FT40	Bone morphogenetic protein 4.	Uncharacterized protein.	0.768