18 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	pard6b	Uncharacterized protein. (377 aa)
	Llgl1.S	WD_REPEATS_REGION domain-containing protein. (999 aa)
	pard6b-2	Uncharacterized protein. (376 aa)
	Scrib.S	Uncharacterized protein. (1826 aa)
	Cttn.S	SH3 domain-containing protein. (503 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	Cttn.L	SH3 domain-containing protein. (551 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	patj	Uncharacterized protein. (1796 aa)
	hcls1	SH3 domain-containing protein. (553 aa)
	hcls1-2	SH3 domain-containing protein. (554 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	stk11	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (432 aa)
	stk11-2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (432 aa)
	myh9	Nonmuscle myosin II heavy chain A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1964 aa)
	rap2a	Rap-2-prov protein. (183 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdh3.S	Scrib.S	A0A1L8GET9	A0A1L8FUA2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.600
Cdh3.S	Tjp1.S	A0A1L8GET9	A0A1L8H090	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
Cdh3.S	actl6a	A0A1L8GET9	Q7ZYI5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Baf53a-pending-prov protein; Belongs to the actin family.	0.931
Cdh3.S	cdh1	A0A1L8GET9	A0A1L8GKV4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.903
Cdh3.S	cdh3	A0A1L8GET9	A0A1L8GKW6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Cdh3.S	hcls1	A0A1L8GET9	A0A1L8GTH8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	SH3 domain-containing protein.	0.409
Cdh3.S	hcls1-2	A0A1L8GET9	A0A1L8GZR7	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	SH3 domain-containing protein.	0.409
Cdh3.S	pard6b	A0A1L8GET9	A0A1L8ELH2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	pard6b-2	A0A1L8GET9	A0A1L8ESP6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.573
Cdh3.S	patj	A0A1L8GET9	A0A1L8GLZ0	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.406
Cttn.L	Tjp1.S	A0A1L8GIU7	A0A1L8H090	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.966
Cttn.L	actl6a	A0A1L8GIU7	Q7ZYI5	SH3 domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.944
Cttn.L	hcls1	A0A1L8GIU7	A0A1L8GTH8	SH3 domain-containing protein.	SH3 domain-containing protein.	0.403
Cttn.L	hcls1-2	A0A1L8GIU7	A0A1L8GZR7	SH3 domain-containing protein.	SH3 domain-containing protein.	0.403
Cttn.S	Tjp1.S	A0A1L8GE11	A0A1L8H090	SH3 domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.966
Cttn.S	actl6a	A0A1L8GE11	Q7ZYI5	SH3 domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.944
Llgl1.S	Scrib.S	A0A1L8ER29	A0A1L8FUA2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.978
Llgl1.S	Tjp1.S	A0A1L8ER29	A0A1L8H090	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.432
Llgl1.S	actl6a	A0A1L8ER29	Q7ZYI5	WD_REPEATS_REGION domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.497
Llgl1.S	pard6b	A0A1L8ER29	A0A1L8ELH2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956