STRINGSTRING
Tdp2.S Tdp2.S mcm3 mcm3 sumo2 sumo2 h3f3b h3f3b Sumo1.S Sumo1.S Sumo1.L Sumo1.L A0A1L8EY07 A0A1L8EY07 Tdp1.L Tdp1.L Prkdc.L Prkdc.L hist2h3c hist2h3c H2B-2 H2B-2 zmcm3 zmcm3 fancd2 fancd2 Ccna1.S Ccna1.S Ccna1.L Ccna1.L Ccna2.S Ccna2.S A0A310TTQ1 A0A310TTQ1 Hist2h2ab.S Hist2h2ab.S ccna2 ccna2 pcna pcna
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tdp2.SEndo/exonuclease/phosphatase domain-containing protein. (382 aa)
mcm3DNA helicase; Belongs to the MCM family. (807 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
h3f3bHistone H3; Belongs to the histone H3 family. (136 aa)
Sumo1.SUbiquitin-like domain-containing protein. (141 aa)
Sumo1.LUbiquitin-like domain-containing protein. (148 aa)
A0A1L8EY07Histone H3; Belongs to the histone H3 family. (120 aa)
Tdp1.LUncharacterized protein. (597 aa)
Prkdc.LUncharacterized protein; Belongs to the PI3/PI4-kinase family. (4146 aa)
hist2h3cHistone H3; Belongs to the histone H3 family. (136 aa)
H2B-2Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (233 aa)
zmcm3DNA helicase; Belongs to the MCM family. (806 aa)
fancd2Uncharacterized protein. (1445 aa)
Ccna1.SCyclin N-terminal domain-containing protein; Belongs to the cyclin family. (418 aa)
Ccna1.LCyclin N-terminal domain-containing protein; Belongs to the cyclin family. (421 aa)
Ccna2.SCyclin N-terminal domain-containing protein; Belongs to the cyclin family. (415 aa)
A0A310TTQ1Histone H3; Belongs to the histone H3 family. (136 aa)
Hist2h2ab.SHistone H2A; Belongs to the histone H2A family. (139 aa)
ccna2MGC130969 protein; Belongs to the cyclin family. (415 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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