21 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8EZU6	PID domain-containing protein. (642 aa)
	NumbL	PID domain-containing protein. (588 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	Vegt.L	Uncharacterized protein. (455 aa)
	fga	Fibrinogen C-terminal domain-containing protein. (762 aa)
	vegt	Uncharacterized protein. (455 aa)
	lgals4.2	Galectin. (319 aa)
	A0A1L8F8U7	PID domain-containing protein. (588 aa)
	Lgals4.L	Galectin. (319 aa)
	tgfb1-2	Transforming growth factor beta; Belongs to the TGF-beta family. (382 aa)
	numbl	PID domain-containing protein. (651 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (413 aa)
	tgfb2-2	Transforming growth factor beta; Belongs to the TGF-beta family. (413 aa)
	Prkci.L	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (588 aa)
	Ctrl.L	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (263 aa)
	A0A1L8H3F1	Uncharacterized protein. (1076 aa)
	Fga.S	Fibrinogen C-terminal domain-containing protein. (763 aa)
	stau1	Uncharacterized protein. (707 aa)
	pard6b	Uncharacterized protein. (377 aa)
	pard6b-2	Uncharacterized protein. (376 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EZU6	Prkci.L	A0A1L8EZU6	A0A1L8GAK2	PID domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.822
A0A1L8EZU6	actl6a	A0A1L8EZU6	Q7ZYI5	PID domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.406
A0A1L8EZU6	pard6b	A0A1L8EZU6	A0A1L8ELH2	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8EZU6	pard6b-2	A0A1L8EZU6	A0A1L8ESP6	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8F8U7	Prkci.L	A0A1L8F8U7	A0A1L8GAK2	PID domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.822
A0A1L8F8U7	actl6a	A0A1L8F8U7	Q7ZYI5	PID domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.413
A0A1L8F8U7	pard6b	A0A1L8F8U7	A0A1L8ELH2	PID domain-containing protein.	Uncharacterized protein.	0.774
A0A1L8F8U7	pard6b-2	A0A1L8F8U7	A0A1L8ESP6	PID domain-containing protein.	Uncharacterized protein.	0.774
Ctrl.L	actl6a	A0A1L8GK48	Q7ZYI5	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.518
Lgals4.L	actl6a	A0A1L8F924	Q7ZYI5	Galectin.	Baf53a-pending-prov protein; Belongs to the actin family.	0.871
NumbL	Prkci.L	A0A1L8F3U1	A0A1L8GAK2	PID domain-containing protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.822
NumbL	actl6a	A0A1L8F3U1	Q7ZYI5	PID domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.414
NumbL	pard6b	A0A1L8F3U1	A0A1L8ELH2	PID domain-containing protein.	Uncharacterized protein.	0.774
NumbL	pard6b-2	A0A1L8F3U1	A0A1L8ESP6	PID domain-containing protein.	Uncharacterized protein.	0.774
Prkci.L	A0A1L8EZU6	A0A1L8GAK2	A0A1L8EZU6	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	PID domain-containing protein.	0.822
Prkci.L	A0A1L8F8U7	A0A1L8GAK2	A0A1L8F8U7	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	PID domain-containing protein.	0.822
Prkci.L	NumbL	A0A1L8GAK2	A0A1L8F3U1	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	PID domain-containing protein.	0.822
Prkci.L	actl6a	A0A1L8GAK2	Q7ZYI5	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Baf53a-pending-prov protein; Belongs to the actin family.	0.768
Prkci.L	numbl	A0A1L8GAK2	A0A1L8FAF0	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	PID domain-containing protein.	0.820
Prkci.L	pard6b	A0A1L8GAK2	A0A1L8ELH2	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Uncharacterized protein.	0.999