12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdh11-2	Cadherin; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)
	A0A1L8H034	Uncharacterized protein. (2543 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	sorbs3	Uncharacterized protein. (737 aa)
	A0A1L8HBL4	ANK_REP_REGION domain-containing protein. (263 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	A0A1L8I385	Uncharacterized protein. (2303 aa)
	Tln2.S	Uncharacterized protein. (2612 aa)
	A0A1L8GTE5	Uncharacterized protein. (2543 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8GTE5	A0A1L8HBL4	A0A1L8GTE5	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.782
A0A1L8GTE5	actl6a	A0A1L8GTE5	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.959
A0A1L8GTE5	cdh11-2	A0A1L8GTE5	O93264	Uncharacterized protein.	Cadherin; Cadherins are calcium-dependent cell adhesion proteins.	0.549
A0A1L8GTE5	ctnnb1	A0A1L8GTE5	Q63ZT4	Uncharacterized protein.	Beta-catenin protein.	0.403
A0A1L8GTE5	pxn	A0A1L8GTE5	A0A1L8I058	Uncharacterized protein.	Uncharacterized protein; Belongs to the paxillin family.	0.997
A0A1L8GTE5	pxn-2	A0A1L8GTE5	Q9I957	Uncharacterized protein.	LOC397826 protein; Belongs to the paxillin family.	0.997
A0A1L8GTE5	sorbs3	A0A1L8GTE5	A0A1L8H226	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8H034	A0A1L8HBL4	A0A1L8H034	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.780
A0A1L8H034	actl6a	A0A1L8H034	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.968
A0A1L8H034	cdh11-2	A0A1L8H034	O93264	Uncharacterized protein.	Cadherin; Cadherins are calcium-dependent cell adhesion proteins.	0.548
A0A1L8H034	ctnnb1	A0A1L8H034	Q63ZT4	Uncharacterized protein.	Beta-catenin protein.	0.404
A0A1L8H034	pxn	A0A1L8H034	A0A1L8I058	Uncharacterized protein.	Uncharacterized protein; Belongs to the paxillin family.	0.997
A0A1L8H034	pxn-2	A0A1L8H034	Q9I957	Uncharacterized protein.	LOC397826 protein; Belongs to the paxillin family.	0.997
A0A1L8H034	sorbs3	A0A1L8H034	A0A1L8H226	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1L8HBL4	A0A1L8GTE5	A0A1L8HBL4	A0A1L8GTE5	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.782
A0A1L8HBL4	A0A1L8H034	A0A1L8HBL4	A0A1L8H034	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.780
A0A1L8HBL4	A0A1L8I385	A0A1L8HBL4	A0A1L8I385	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.768
A0A1L8HBL4	Tln2.S	A0A1L8HBL4	A0A310UCZ7	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.769
A0A1L8HBL4	actl6a	A0A1L8HBL4	Q7ZYI5	ANK_REP_REGION domain-containing protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.627
A0A1L8HBL4	ctnnb1	A0A1L8HBL4	Q63ZT4	ANK_REP_REGION domain-containing protein.	Beta-catenin protein.	0.548