4 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grp	Uncharacterized protein. (156 aa)
	Sst.2	Somatostatin domain-containing protein. (157 aa)
	grp-2	Uncharacterized protein. (156 aa)
	sst	Preprosomatostatin 1a. (115 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Sst.2	grp	A0A1L8G9W6	A0A1L8HRW8	Somatostatin domain-containing protein.	Uncharacterized protein.	0.880
Sst.2	grp-2	A0A1L8G9W6	A0A1L8I2M4	Somatostatin domain-containing protein.	Uncharacterized protein.	0.880
Sst.2	sst	A0A1L8G9W6	Q7T1N3	Somatostatin domain-containing protein.	Preprosomatostatin 1a.	0.900
grp	Sst.2	A0A1L8HRW8	A0A1L8G9W6	Uncharacterized protein.	Somatostatin domain-containing protein.	0.880
grp	grp-2	A0A1L8HRW8	A0A1L8I2M4	Uncharacterized protein.	Uncharacterized protein.	0.927
grp	sst	A0A1L8HRW8	Q7T1N3	Uncharacterized protein.	Preprosomatostatin 1a.	0.880
grp-2	Sst.2	A0A1L8I2M4	A0A1L8G9W6	Uncharacterized protein.	Somatostatin domain-containing protein.	0.880
grp-2	grp	A0A1L8I2M4	A0A1L8HRW8	Uncharacterized protein.	Uncharacterized protein.	0.927
grp-2	sst	A0A1L8I2M4	Q7T1N3	Uncharacterized protein.	Preprosomatostatin 1a.	0.880
sst	Sst.2	Q7T1N3	A0A1L8G9W6	Preprosomatostatin 1a.	Somatostatin domain-containing protein.	0.900
sst	grp	Q7T1N3	A0A1L8HRW8	Preprosomatostatin 1a.	Uncharacterized protein.	0.880
sst	grp-2	Q7T1N3	A0A1L8I2M4	Preprosomatostatin 1a.	Uncharacterized protein.	0.880