14 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pcsk9.L	Uncharacterized protein. (676 aa)
	Apob.L	Vitellogenin domain-containing protein. (4627 aa)
	ube3c	HECT domain-containing protein. (1080 aa)
	tradd	Death domain-containing protein. (303 aa)
	ube3c-2	HECT domain-containing protein. (1082 aa)
	klf9	Basic transcription element binding protein 1. (292 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	A0A310U4X8	Glyceraldehyde-3-phosphate dehydrogenase. (294 aa)
	Ptprd.S	Uncharacterized protein. (1897 aa)
	Alb.S	Uncharacterized protein. (607 aa)
	arhgef7-2	Uncharacterized protein. (802 aa)
	arhgef7	Uncharacterized protein. (818 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A310U4X8	Alb.S	A0A310U4X8	A0A1L8HMG9	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.723
A0A310U4X8	Gapdh.S	A0A310U4X8	Q7ZY52	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.901
A0A310U4X8	LOC100189571	A0A310U4X8	B7ZRX0	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.727
A0A310U4X8	gapdh	A0A310U4X8	Q8AY70	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.901
A0A310U4X8	tradd	A0A310U4X8	A0A1L8GKL2	Glyceraldehyde-3-phosphate dehydrogenase.	Death domain-containing protein.	0.909
Alb.S	A0A310U4X8	A0A1L8HMG9	A0A310U4X8	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.723
Alb.S	Apob.L	A0A1L8HMG9	A0A1L8GBN8	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.665
Alb.S	Gapdh.S	A0A1L8HMG9	Q7ZY52	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
Alb.S	gapdh	A0A1L8HMG9	Q8AY70	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
Apob.L	Alb.S	A0A1L8GBN8	A0A1L8HMG9	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.665
Apob.L	LOC100189571	A0A1L8GBN8	B7ZRX0	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.695
Apob.L	Pcsk9.L	A0A1L8GBN8	A0A1L8GMI6	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.819
Gapdh.S	A0A310U4X8	Q7ZY52	A0A310U4X8	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.901
Gapdh.S	Alb.S	Q7ZY52	A0A1L8HMG9	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.900
Gapdh.S	LOC100189571	Q7ZY52	B7ZRX0	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.900
Gapdh.S	gapdh	Q7ZY52	Q8AY70	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
Gapdh.S	tradd	Q7ZY52	A0A1L8GKL2	Glyceraldehyde-3-phosphate dehydrogenase.	Death domain-containing protein.	0.909
LOC100189571	A0A310U4X8	B7ZRX0	A0A310U4X8	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.727
LOC100189571	Apob.L	B7ZRX0	A0A1L8GBN8	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.695
LOC100189571	Gapdh.S	B7ZRX0	Q7ZY52	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900