11 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	Prkacb.S	Uncharacterized protein; Belongs to the protein kinase superfamily. (338 aa)
	kif2c	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (730 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	Alb.S	Uncharacterized protein. (607 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alb.S	Prkacb.S	A0A1L8HMG9	A0A1L8GLU4	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.498
LOC100189571	Prkacb.S	B7ZRX0	A0A1L8GLU4	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.515
Prkacb.S	Alb.S	A0A1L8GLU4	A0A1L8HMG9	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.498
Prkacb.S	LOC100189571	A0A1L8GLU4	B7ZRX0	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.515
Stmn1.S	kif2c	A0A1L8H795	A0A1L8GM91	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.891
Stmn1.S	stmn1	A0A1L8H795	A0A1L8HEF1	Uncharacterized protein.	Stathmin; Belongs to the stathmin family.	0.900
kif2c	Stmn1.S	A0A1L8GM91	A0A1L8H795	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.891
kif2c	stmn1	A0A1L8GM91	A0A1L8HEF1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.894
kif2c	stmn2	A0A1L8GM91	A0A1L8FZA7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.687
kif2c	stmn2-2	A0A1L8GM91	Q6DJD4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.700
kif2c	stmn3	A0A1L8GM91	Q4KLA7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.748
kif2c	stmn3-2	A0A1L8GM91	Q8AVQ7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.748
kif2c	stmn4	A0A1L8GM91	A0A1L8G5Z4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Stathmin; Belongs to the stathmin family.	0.749
stmn1	Stmn1.S	A0A1L8HEF1	A0A1L8H795	Stathmin; Belongs to the stathmin family.	Uncharacterized protein.	0.900
stmn1	kif2c	A0A1L8HEF1	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.894
stmn2	kif2c	A0A1L8FZA7	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.687
stmn2-2	kif2c	Q6DJD4	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.700
stmn3	kif2c	Q4KLA7	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.748
stmn3-2	kif2c	Q8AVQ7	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.748
stmn4	kif2c	A0A1L8G5Z4	A0A1L8GM91	Stathmin; Belongs to the stathmin family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.749