19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	Zeb2.S	Uncharacterized protein. (1246 aa)
	Kremen2.S	Uncharacterized protein. (421 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	dkk1-2	Dickkopf homolog 1. (259 aa)
	Casp3.L	Uncharacterized protein; Belongs to the peptidase C14A family. (253 aa)
	casp3.2	Uncharacterized protein; Belongs to the peptidase C14A family. (288 aa)
	plat	Plasminogen activator; Belongs to the peptidase S1 family. (566 aa)
	tead1	TEA domain-containing protein. (447 aa)
	pxdn-2	Uncharacterized protein. (1464 aa)
	pxdn	Uncharacterized protein. (1461 aa)
	Zeb1.S	Uncharacterized protein. (919 aa)
	dkk1	Dickkopf_N domain-containing protein. (263 aa)
	A0A1L8FG29	Uncharacterized protein. (180 aa)
	A0A1L8FG12	Uncharacterized protein. (195 aa)
	kremen2	Uncharacterized protein. (420 aa)
	Mmp9.L	Uncharacterized protein. (674 aa)
	mmp9	Gelatinase B. (671 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8FG12	A0A1L8FG29	A0A1L8FG12	A0A1L8FG29	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8FG29	A0A1L8FG12	A0A1L8FG29	A0A1L8FG12	Uncharacterized protein.	Uncharacterized protein.	0.900
Casp3.L	Gapdh.S	A0A1L8HU08	Q7ZY52	Uncharacterized protein; Belongs to the peptidase C14A family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.811
Casp3.L	Mmp9.L	A0A1L8HU08	A0A1L8ETV1	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.562
Casp3.L	casp3.2	A0A1L8HU08	A0A1L8HLJ6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.901
Casp3.L	ctnnb1	A0A1L8HU08	Q63ZT4	Uncharacterized protein; Belongs to the peptidase C14A family.	Beta-catenin protein.	0.878
Casp3.L	gapdh	A0A1L8HU08	Q8AY70	Uncharacterized protein; Belongs to the peptidase C14A family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.811
Casp3.L	mmp9	A0A1L8HU08	Q9W7L6	Uncharacterized protein; Belongs to the peptidase C14A family.	Gelatinase B.	0.559
Casp3.L	pxdn	A0A1L8HU08	A0A1L8G530	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.779
Casp3.L	pxdn-2	A0A1L8HU08	A0A1L8GBD8	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.779
Gapdh.S	Casp3.L	Q7ZY52	A0A1L8HU08	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.811
Gapdh.S	Mmp9.L	Q7ZY52	A0A1L8ETV1	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.505
Gapdh.S	casp3.2	Q7ZY52	A0A1L8HLJ6	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.811
Gapdh.S	ctnnb1	Q7ZY52	Q63ZT4	Glyceraldehyde-3-phosphate dehydrogenase.	Beta-catenin protein.	0.924
Gapdh.S	dkk1	Q7ZY52	A0A1L8FIS6	Glyceraldehyde-3-phosphate dehydrogenase.	Dickkopf_N domain-containing protein.	0.555
Gapdh.S	dkk1-2	Q7ZY52	O57464	Glyceraldehyde-3-phosphate dehydrogenase.	Dickkopf homolog 1.	0.559
Gapdh.S	gapdh	Q7ZY52	Q8AY70	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
Gapdh.S	mmp9	Q7ZY52	Q9W7L6	Glyceraldehyde-3-phosphate dehydrogenase.	Gelatinase B.	0.505
Gapdh.S	pxdn	Q7ZY52	A0A1L8G530	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.944
Gapdh.S	pxdn-2	Q7ZY52	A0A1L8GBD8	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein.	0.944