STRINGSTRING
parp1 parp1 top2a top2a psmd14 psmd14 pcna pcna sumo2 sumo2 Sumo1.S Sumo1.S rtel1 rtel1 Brca1.L Brca1.L top1.1 top1.1 sumo2-2 sumo2-2 Sumo1.L Sumo1.L top3a top3a Cul4b.S Cul4b.S Ring1.S Ring1.S A0A1L8F712 A0A1L8F712 ring1 ring1 mdc1 mdc1 sae1 sae1 Tdp1.L Tdp1.L rad51 rad51 chek1 chek1 pnkp pnkp ercc1 ercc1 chek1-2 chek1-2 cbl cbl lig1 lig1 Pold1.L Pold1.L Ddi2.L Ddi2.L Bmi1.S Bmi1.S Tdp2.S Tdp2.S Bmi1.L Bmi1.L Prkdc.L Prkdc.L Nbn.L Nbn.L Znf451.L Znf451.L cul3 cul3 cul3-2 cul3-2 fen1 fen1 Cdh1.S Cdh1.S top1.2 top1.2 rbx1 rbx1 Mst1.S Mst1.S fen1-2 fen1-2 cdh1 cdh1 cdh3 cdh3 uba2 uba2 mst1 mst1 polb polb pias1 pias1 rad50 rad50 rad50-2 rad50-2 Pias1.L Pias1.L rpa2 rpa2 rpa2-2 rpa2-2 brca2 brca2 acin1 acin1 Rnf4-a Rnf4-a Pias4.L Pias4.L Chek2.L Chek2.L Top3b.L Top3b.L Cbl.S Cbl.S rnf4 rnf4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
top2aDNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1579 aa)
psmd14Psmd14-prov protein. (310 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
Sumo1.SUbiquitin-like domain-containing protein. (141 aa)
rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1275 aa)
Brca1.LUncharacterized protein. (1582 aa)
top1.1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (821 aa)
sumo2-2Ubiquitin-like domain-containing protein. (98 aa)
Sumo1.LUbiquitin-like domain-containing protein. (148 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1022 aa)
Cul4b.SCULLIN_2 domain-containing protein; Belongs to the cullin family. (866 aa)
Ring1.SRING-type domain-containing protein. (376 aa)
A0A1L8F712Serine protease; Belongs to the peptidase S1B family. (349 aa)
ring1RING-type domain-containing protein. (372 aa)
mdc1Uncharacterized protein. (2103 aa)
sae1ThiF domain-containing protein. (344 aa)
Tdp1.LUncharacterized protein. (597 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (336 aa)
chek1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (474 aa)
pnkpFHA_2 domain-containing protein. (594 aa)
ercc1Uncharacterized protein. (297 aa)
chek1-2Protein kinase domain-containing protein. (510 aa)
cblUncharacterized protein. (887 aa)
lig1DNA ligase. (1062 aa)
Pold1.LDNA polymerase. (1109 aa)
Ddi2.LUbiquitin-like domain-containing protein. (393 aa)
Bmi1.SRING-type domain-containing protein. (367 aa)
Tdp2.SEndo/exonuclease/phosphatase domain-containing protein. (382 aa)
Bmi1.LRING-type domain-containing protein. (323 aa)
Prkdc.LUncharacterized protein; Belongs to the PI3/PI4-kinase family. (4146 aa)
Nbn.LNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (762 aa)
Znf451.LUncharacterized protein. (1207 aa)
cul3CULLIN_2 domain-containing protein; Belongs to the cullin family. (768 aa)
cul3-2CULLIN_2 domain-containing protein; Belongs to the cullin family. (768 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (382 aa)
Cdh1.SUncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (914 aa)
top1.2DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (770 aa)
rbx1RING-type domain-containing protein. (120 aa)
Mst1.SUncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily. (716 aa)
fen1-2Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (382 aa)
cdh1Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
cdh3Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
uba2SUMO-activating enzyme subunit 2; The heterodimer acts as an E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2. Belongs to the ubiquitin-activating E1 family. (641 aa)
mst1Uncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily. (718 aa)
polbDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (334 aa)
pias1Uncharacterized protein. (640 aa)
rad50Zinc-hook domain-containing protein. (1311 aa)
rad50-2Zinc-hook domain-containing protein. (1312 aa)
Pias1.LUncharacterized protein. (649 aa)
rpa2RPA_C domain-containing protein. (274 aa)
rpa2-2RPA_C domain-containing protein. (276 aa)
brca2Tower domain-containing protein. (3177 aa)
acin1Uncharacterized protein. (2021 aa)
Rnf4-aRING-type domain-containing protein. (190 aa)
Pias4.LUncharacterized protein. (544 aa)
Chek2.LUncharacterized protein. (392 aa)
Top3b.LDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (824 aa)
Cbl.SUncharacterized protein. (945 aa)
rnf4LOC495944 protein. (190 aa)
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
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