10 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fn1.S	Uncharacterized protein. (2480 aa)
	bdnf	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (247 aa)
	ntf3	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (274 aa)
	ntf3-2	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (274 aa)
	Alb.S	Uncharacterized protein. (607 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	bdnf-2	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (247 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Alb.S	Fn1.S	A0A1L8HMG9	A0A1L8EPN8	Uncharacterized protein.	Uncharacterized protein.	0.698
Alb.S	actl6a	A0A1L8HMG9	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.882
Alb.S	bdnf	A0A1L8HMG9	A0A1L8GDT3	Uncharacterized protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.523
Alb.S	bdnf-2	A0A1L8HMG9	Q63ZM5	Uncharacterized protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.524
Fn1.S	Alb.S	A0A1L8EPN8	A0A1L8HMG9	Uncharacterized protein.	Uncharacterized protein.	0.698
Fn1.S	LOC100189571	A0A1L8EPN8	B7ZRX0	Uncharacterized protein.	Uncharacterized protein.	0.698
Fn1.S	actl6a	A0A1L8EPN8	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.893
Fn1.S	pxn	A0A1L8EPN8	A0A1L8I058	Uncharacterized protein.	Uncharacterized protein; Belongs to the paxillin family.	0.624
Fn1.S	pxn-2	A0A1L8EPN8	Q9I957	Uncharacterized protein.	LOC397826 protein; Belongs to the paxillin family.	0.624
LOC100189571	Fn1.S	B7ZRX0	A0A1L8EPN8	Uncharacterized protein.	Uncharacterized protein.	0.698
LOC100189571	actl6a	B7ZRX0	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.883
LOC100189571	bdnf	B7ZRX0	A0A1L8GDT3	Uncharacterized protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.527
LOC100189571	bdnf-2	B7ZRX0	Q63ZM5	Uncharacterized protein.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.541
actl6a	Alb.S	Q7ZYI5	A0A1L8HMG9	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.882
actl6a	Fn1.S	Q7ZYI5	A0A1L8EPN8	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.893
actl6a	LOC100189571	Q7ZYI5	B7ZRX0	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.883
actl6a	bdnf	Q7ZYI5	A0A1L8GDT3	Baf53a-pending-prov protein; Belongs to the actin family.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.630
actl6a	bdnf-2	Q7ZYI5	Q63ZM5	Baf53a-pending-prov protein; Belongs to the actin family.	Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.	0.630
actl6a	pxn	Q7ZYI5	A0A1L8I058	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the paxillin family.	0.932
actl6a	pxn-2	Q7ZYI5	Q9I957	Baf53a-pending-prov protein; Belongs to the actin family.	LOC397826 protein; Belongs to the paxillin family.	0.932